Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013511.1 Corchorus capsularis cultivar CVL-1 contig13532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13097

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1825--1851
14
1.9
14
100
0
54
29
29
0
40
1.57
1836--2766
35
26.8
34
82
11
1047
32
17
9
39
1.83
1836--2767
108
8.9
108
84
7
1109
32
17
10
39
1.83
2481--2567
26
3.1
26
83
15
111
32
20
8
39
1.82
6292--6423
33
4.0
33
69
17
96
37
30
15
17
1.90
6244--6494
104
2.5
98
84
5
313
38
27
16
17
1.91
6244--6512
36
7.8
36
68
10
184
37
27
16
17
1.92
6509--6539
8
3.9
8
91
0
53
38
9
25
25
1.86
6510--6558
16
3.1
16
82
5
55
44
4
24
26
1.71
6552--6639
35
2.5
35
79
1
97
36
19
23
20
1.95
6594--6673
35
2.4
33
78
4
79
36
18
23
21
1.95
7977--8036
21
2.8
22
80
7
70
0
26
5
68
1.10
8005--8038
11
3.1
11
88
12
52
0
20
0
79
0.73
7997--8045
15
3.1
16
80
13
57
0
24
2
73
0.94
8861--8921
13
4.3
14
76
15
63
4
19
0
75
0.98
8867--8923
29
2.0
29
82
6
71
7
21
0
71
1.08
11847--12581
35
20.8
34
83
8
830
32
17
10
39
1.83
11902--12411
19
28.5
17
62
20
107
32
15
10
40
1.82
11847--12582
108
6.9
105
85
6
878
32
17
10
39
1.84

Tables:   1

The End!