Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013582.1 Corchorus capsularis cultivar CVL-1 contig13603, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7810

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1544--1596
27
2.0
27
85
7
74
39
9
1
49
1.46
1666--1717
24
2.2
23
80
16
61
40
7
1
50
1.42
6680--7300
35
17.3
35
79
8
423
36
16
8
38
1.78
6680--7300
70
8.7
70
75
10
484
36
16
8
38
1.78
6770--6817
21
2.3
21
92
0
78
39
12
2
45
1.54
6715--7582
91
9.4
91
72
14
627
36
17
7
38
1.78
6684--7537
126
6.6
124
73
16
508
36
16
7
38
1.78
6869--6908
21
1.9
21
90
10
64
37
15
0
47
1.45
6834--6943
56
2.0
56
92
3
186
38
17
5
39
1.73
7081--7139
19
3.3
19
65
13
52
37
16
10
35
1.83
7127--7195
21
3.3
21
89
4
104
37
13
4
44
1.63
7193--7286
19
5.3
19
66
14
65
32
15
13
37
1.88
6876--7463
147
4.1
147
79
11
537
35
17
7
39
1.78
7307--7531
43
5.0
43
81
17
287
36
18
7
38
1.78
7156--7531
142
2.8
138
85
8
490
35
17
7
39
1.79
7462--7523
19
3.2
19
65
13
54
32
17
11
38
1.85
7452--7526
39
1.9
39
100
0
150
34
17
9
38
1.82
7350--7600
95
2.6
95
95
3
439
35
18
6
39
1.77
7491--7597
56
1.9
56
92
0
178
35
16
6
41
1.75

Tables:   1

The End!