genome.fa.s13751.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013751.1 Corchorus capsularis cultivar CVL-1 contig13772, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84244

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2965--3009	21	2.1	22	83	4	56	15	31	11	42	1.82
3263--3287	13	1.9	13	100	0	50	32	8	20	40	1.81
3431--3469	15	2.4	16	91	8	62	35	0	2	61	1.10
3421--3731	156	2.0	156	96	0	577	34	3	11	50	1.56
4979--5028	18	2.8	18	87	3	66	40	34	10	16	1.81
7432--7471	13	3.1	13	85	0	53	45	15	15	25	1.84
7464--7494	11	2.8	11	90	0	53	32	9	22	35	1.87
7790--7832	16	2.7	16	82	10	52	20	2	11	65	1.36
7932--8012	39	2.0	41	83	4	103	34	19	13	32	1.91
10361--10427	30	2.2	30	91	0	107	28	19	29	22	1.98
11895--11941	21	2.2	20	88	7	67	53	14	4	27	1.60
15782--15807	12	2.2	12	100	0	52	38	46	15	0	1.46
16082--16114	11	2.8	12	86	13	50	54	24	9	12	1.66
19657--19725	12	5.8	12	78	13	79	40	0	24	34	1.56
19657--19725	24	2.9	24	88	0	111	40	0	24	34	1.56
19833--19981	18	8.3	18	78	3	111	25	20	24	29	1.99
19834--19981	27	5.1	27	75	13	116	25	20	23	29	1.99
19834--19981	45	3.3	45	81	0	188	25	20	23	29	1.99
20234--20271	15	2.5	15	80	16	51	39	0	36	23	1.55
22112--22151	10	4.0	10	90	0	53	0	17	0	82	0.67
28664--28743	42	1.9	42	84	5	108	22	26	13	37	1.91
29646--29707	22	2.7	23	73	19	65	35	11	16	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31798--31830	14	2.4	14	90	5	50	90	0	9	0	0.44
46775--46840	34	1.9	34	90	0	105	45	12	18	24	1.83
47871--47934	16	4.1	16	88	9	96	85	12	0	1	0.66
47873--47935	5	12.0	5	81	9	72	84	14	0	1	0.71
51629--51730	31	3.3	31	84	0	123	18	22	26	32	1.97
60519--60553	2	17.5	2	100	0	70	48	0	0	51	1.00
60624--60648	13	1.9	13	100	0	50	56	8	8	28	1.57
70991--71197	109	2.0	104	85	7	285	46	8	10	34	1.68
71865--71916	15	3.4	15	89	2	77	59	3	0	36	1.16
71952--72010	31	1.9	31	89	0	91	44	3	18	33	1.67
72030--72096	6	11.3	6	84	15	95	49	0	17	32	1.48
72030--72091	22	3.0	22	93	6	103	50	0	17	32	1.47
72719--72765	5	9.2	5	86	4	67	2	0	14	82	0.75
72719--72779	10	6.0	10	83	9	70	1	0	13	85	0.68
72721--72777	27	2.2	26	93	3	96	1	0	12	85	0.66
72769--73722	491	1.9	490	95	0	1703	30	15	19	33	1.93
77043--77605	281	2.0	281	96	0	1045	36	23	16	23	1.94
79105--79163	31	1.9	31	82	0	73	33	6	18	40	1.77
79447--79492	23	2.0	23	95	0	83	32	26	15	26	1.95
79625--79650	12	2.2	12	100	0	52	46	7	15	30	1.74
80198--80240	21	2.0	21	90	0	68	18	37	11	32	1.87
81602--81902	157	1.9	156	87	3	444	38	18	13	28	1.89

Tables:   1

The End!