Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013771.1 Corchorus capsularis cultivar CVL-1 contig13792, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16094

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59--203
44
3.2
44
82
9
161
34
11
17
35
1.87
50--210
22
7.2
22
75
4
108
33
10
18
37
1.85
246--359
22
5.2
21
73
12
77
33
7
20
38
1.81
456--646
44
4.4
44
74
9
126
42
9
14
33
1.77
378--624
22
11.3
22
70
12
118
42
9
14
33
1.79
724--762
20
2.0
20
100
0
78
41
10
23
25
1.86
698--993
22
13.6
22
68
11
101
39
8
17
34
1.80
897--982
23
3.7
23
75
4
75
40
9
13
36
1.77
750--1023
22
12.6
21
68
16
80
39
9
14
35
1.80
966--1034
22
3.1
22
70
12
52
34
13
14
37
1.85
1060--1136
22
3.5
21
77
7
55
35
12
14
37
1.84
1072--1137
22
3.0
22
80
4
69
31
12
16
39
1.85
12209--12246
20
2.0
19
85
10
51
42
13
5
39
1.66
13700--13738
14
2.7
14
84
4
51
56
7
7
28
1.55
13721--13760
13
3.1
14
86
10
50
45
10
12
32
1.75
14403--14447
16
2.9
16
80
16
58
82
2
15
0
0.77
15523--16094
37
15.4
37
80
5
600
22
16
15
45
1.85
15578--16094
74
7.0
74
94
0
856
22
17
15
45
1.85

Tables:   1

The End!