Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013799.1 Corchorus capsularis cultivar CVL-1 contig13820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48384

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
991--1252
107
2.5
103
88
4
373
40
8
9
41
1.68
3014--3223
104
2.0
104
99
0
411
38
17
10
33
1.84
5037--5079
13
3.1
15
74
19
56
39
11
2
46
1.53
13623--13725
39
2.7
38
86
8
129
19
9
28
42
1.82
13903--14078
37
4.8
37
73
11
157
23
18
15
42
1.88
14612--14681
37
2.0
35
89
10
108
45
7
0
47
1.30
14968--15279
166
1.9
166
85
5
434
37
16
16
29
1.91
18805--18851
21
2.2
23
77
14
55
68
2
4
25
1.19
18812--18851
18
2.2
18
86
0
53
67
2
5
25
1.23
19421--19458
20
2.0
19
85
10
51
50
13
5
31
1.63
20136--20160
12
2.1
12
100
0
50
32
16
0
52
1.44
28350--28375
12
2.2
12
100
0
52
42
0
19
38
1.51
28555--28815
21
12.8
20
78
10
244
30
11
22
34
1.90
28555--28815
42
6.4
42
84
4
279
30
11
22
34
1.90
28849--28893
21
2.2
21
92
4
74
37
24
11
26
1.89
29085--29123
17
2.4
16
87
8
53
69
10
0
20
1.17
32073--32116
23
1.9
23
100
0
88
54
9
9
27
1.62
46599--46684
45
1.9
45
95
0
154
36
17
20
25
1.95
47076--47113
2
19.5
2
89
5
60
55
0
0
44
0.99
47130--47176
3
15.3
3
95
4
85
34
0
0
65
0.93
47207--47686
168
2.9
165
82
5
624
29
16
16
38
1.90

Tables:   1

The End!