Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013842.1 Corchorus capsularis cultivar CVL-1 contig13863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114327

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
270--301
16
2.0
16
93
0
55
65
34
0
0
0.93
3681--3723
1
43.0
1
100
0
86
100
0
0
0
0.00
19201--19370
84
2.0
84
100
0
340
29
3
32
34
1.75
20540--20570
12
2.5
12
94
5
53
45
0
9
45
1.36
22441--22491
21
2.4
21
90
6
77
31
17
23
27
1.97
22508--22564
30
1.9
30
85
0
78
31
21
15
31
1.94
23798--23947
79
1.9
79
84
2
203
22
25
19
32
1.97
24964--25014
21
2.4
21
93
6
86
29
19
23
27
1.98
29714--29763
24
2.1
24
84
0
64
48
0
8
44
1.32
35442--35603
58
2.8
58
100
0
324
32
13
24
29
1.93
38616--38670
26
2.1
26
96
0
101
16
16
43
23
1.87
39461--39505
21
2.1
21
95
0
81
40
4
15
40
1.67
58477--58515
18
2.2
18
85
0
51
33
28
0
38
1.57
61364--61425
31
2.0
31
83
0
79
32
22
24
20
1.98
66440--66464
2
12.5
2
100
0
50
48
0
52
0
1.00
70145--70389
120
2.0
120
96
0
445
36
24
15
24
1.93
73189--73223
16
2.2
16
100
0
70
45
17
25
11
1.81
76343--76377
16
2.2
16
89
0
52
11
25
17
45
1.81
77118--77260
68
2.1
68
90
2
225
13
18
15
51
1.76
79487--79521
16
2.2
16
100
0
70
11
25
17
45
1.81
94291--94673
66
5.8
66
83
3
405
27
14
19
39
1.89
94291--94673
198
1.9
198
82
3
475
27
14
19
39
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107958--107987
1
30.0
1
100
0
60
0
0
0
100
0.00

Tables:   1

The End!