Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013911.1 Corchorus capsularis cultivar CVL-1 contig13932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45985

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
610--638
2
14.5
2
100
0
58
48
0
0
51
1.00
2343--2505
53
3.1
53
97
1
301
30
25
4
39
1.77
3016--3075
16
3.8
16
79
16
72
71
1
3
23
1.10
3016--3064
16
3.1
16
91
2
73
69
0
4
26
1.06
4368--4407
2
20.0
2
94
0
71
52
0
0
47
1.00
5698--5814
3
39.3
3
94
1
209
33
0
33
32
1.64
6877--6929
12
4.3
12
90
4
88
26
20
16
35
1.94
6877--6929
25
2.2
24
93
3
88
26
20
16
35
1.94
7096--7133
17
2.2
17
90
9
60
0
5
10
84
0.77
8121--8494
105
3.6
105
88
3
508
40
8
9
42
1.66
8121--8505
209
1.8
207
85
3
531
40
8
9
42
1.66
8761--8817
17
3.4
17
81
11
64
36
19
19
24
1.94
14285--14319
18
1.9
18
100
0
70
31
5
5
57
1.46
15244--15281
16
2.4
16
82
4
51
7
13
36
42
1.73
18848--19106
128
2.0
128
96
0
482
36
16
14
31
1.90
19275--19792
258
2.0
258
93
0
883
31
19
26
22
1.98
22141--22168
2
14.0
2
100
0
56
0
0
50
50
1.00
32129--32168
20
2.0
20
85
0
53
45
17
2
35
1.62
33597--33730
60
2.2
61
82
7
157
39
4
30
25
1.75
40698--40841
73
2.0
73
97
0
270
33
20
17
29
1.95

Tables:   1

The End!