genome.fa.s13942.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013942.1 Corchorus capsularis cultivar CVL-1 contig13963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123567

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--52	2	26.0	2	100	0	104	0	50	0	50	1.00
11314--11343	14	2.1	14	93	0	51	3	6	3	86	0.77
14403--14777	48	7.8	48	89	3	524	11	25	25	37	1.90
21960--21996	15	2.3	17	90	9	60	83	0	16	0	0.64
21960--21997	16	2.3	17	86	4	51	84	0	15	0	0.63
22778--22841	18	3.6	18	82	0	74	39	28	6	26	1.80
22949--23041	35	2.7	35	84	3	116	31	18	23	26	1.97
23549--23597	6	8.2	6	78	17	57	18	0	0	81	0.69
23543--23597	12	3.9	14	75	22	53	20	0	0	80	0.72
23543--23597	5	11.0	5	84	11	69	20	0	0	80	0.72
23553--23597	19	2.5	18	86	10	65	17	0	0	82	0.68
26798--26834	18	2.1	18	100	0	74	37	5	21	35	1.77
26816--26924	43	2.5	43	95	0	200	35	8	20	35	1.82
26776--27321	99	5.5	99	93	2	896	38	7	18	35	1.78
26928--27468	43	11.3	44	76	20	394	39	6	17	36	1.77
26972--27277	56	5.9	55	78	18	381	39	6	18	35	1.76
26776--27321	199	2.7	198	94	2	932	38	7	18	35	1.78
27042--27523	242	2.0	242	90	1	761	38	7	18	36	1.78
27284--27524	100	2.4	99	87	2	322	37	6	18	37	1.77
26776--27543	298	2.6	284	83	10	782	38	6	18	36	1.77
27420--27552	56	2.4	56	83	2	160	39	5	17	38	1.72
27505--27557	21	2.5	21	87	0	79	47	0	15	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38717--38750	2	17.5	2	93	6	61	50	0	0	50	1.00
39603--39667	32	2.0	32	82	5	78	12	16	20	50	1.77
41834--41879	23	2.0	23	82	0	56	30	23	13	32	1.93
44723--44812	18	5.0	18	82	9	103	31	12	31	25	1.92
46830--46979	76	2.0	75	86	1	210	30	24	7	38	1.83
47646--47678	17	1.9	17	93	0	57	45	18	21	15	1.85
47695--47787	19	4.7	19	72	10	71	48	17	17	17	1.82
52056--52539	242	2.0	241	95	0	878	44	16	11	28	1.82
58097--58471	188	2.0	188	97	0	714	25	19	16	38	1.92
60825--60870	17	2.7	17	93	0	83	10	45	34	8	1.70
60859--60991	68	2.0	68	80	3	151	15	36	38	10	1.81
61604--61650	19	2.5	20	80	13	55	4	25	0	70	1.05
62892--62930	4	9.8	4	94	0	69	25	2	23	48	1.63
63079--63116	16	2.4	16	86	4	60	55	10	0	34	1.34
63762--63800	4	9.8	4	88	0	60	28	2	20	48	1.62
64018--64063	22	2.1	22	91	0	74	21	2	13	63	1.40
64027--64068	22	1.9	22	95	0	75	16	7	14	61	1.53
64639--64704	2	33.5	2	82	8	82	54	0	1	43	1.09
65248--65274	2	13.5	2	100	0	54	48	0	0	51	1.00
68395--68450	27	2.0	27	82	3	67	50	0	0	50	1.00
72126--72165	19	2.2	18	86	4	53	30	20	5	45	1.72
73399--73433	11	3.2	11	87	0	52	22	14	8	54	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79169--79208	19	2.2	18	86	4	53	30	20	5	45	1.72
79626--79671	22	2.1	22	83	0	56	21	30	28	19	1.98
82361--82407	26	1.9	24	87	12	69	51	17	21	10	1.75
84623--84667	22	2.0	22	91	0	72	22	28	28	20	1.98
85644--85763	41	2.9	41	96	0	213	43	9	24	23	1.82
93745--93802	29	2.0	29	93	0	98	25	29	18	25	1.98
95391--95483	38	2.3	40	87	5	136	41	15	17	25	1.88
98260--98314	22	2.5	22	96	0	101	60	5	27	7	1.46
100024--100131	26	4.1	27	77	5	105	54	7	20	17	1.66
100207--100284	15	4.9	15	75	14	75	58	2	16	21	1.49
100242--100290	7	6.7	7	79	9	53	63	2	14	20	1.40
100175--100291	57	2.1	57	80	6	130	54	4	17	23	1.60
100223--100299	22	3.6	22	79	8	70	58	3	15	22	1.53
100242--100301	15	4.1	15	80	4	59	61	3	15	20	1.47
100209--100304	50	1.9	49	87	6	140	59	3	16	20	1.51
100267--100343	35	2.2	34	86	2	109	61	2	18	18	1.47
100316--100367	14	3.8	14	76	5	52	53	3	21	21	1.61
100349--100527	22	8.2	22	76	20	148	51	3	22	21	1.64
100317--100566	91	2.7	91	88	0	383	52	4	22	20	1.63
100412--100470	27	2.2	27	84	6	75	52	5	22	20	1.65
100420--100478	27	2.2	27	81	6	66	55	3	22	18	1.57
100499--100661	14	11.4	14	69	12	98	53	4	22	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100558--100679	27	4.4	28	73	9	108	54	3	24	18	1.58
100545--100728	41	4.5	41	83	6	196	54	4	22	18	1.61
100586--100857	7	40.3	7	63	19	87	55	2	24	17	1.53
100558--100674	14	8.5	13	72	9	81	54	3	23	17	1.58
100641--100768	67	1.9	67	91	3	213	56	3	22	17	1.57
100709--100798	46	2.0	46	86	0	126	56	3	22	17	1.55
100701--100857	27	5.9	27	70	20	123	56	1	24	17	1.51
112084--112199	58	2.0	58	98	0	223	18	10	16	55	1.69
114826--114875	26	1.9	26	83	0	64	18	20	10	52	1.73
116329--116372	22	2.0	22	86	4	63	52	0	22	25	1.48
121321--121397	33	2.3	32	86	6	109	20	44	27	7	1.79
122408--122441	9	3.7	9	92	4	50	82	0	2	14	0.79

Tables:   1

The End!