Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013963.1 Corchorus capsularis cultivar CVL-1 contig13984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91528

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3255--3293
20
2.0
20
89
0
60
41
20
10
28
1.85
3789--3860
27
2.7
26
89
8
101
48
26
11
13
1.76
5469--5503
18
1.9
18
88
0
52
34
0
0
65
0.93
6186--6388
62
3.3
62
82
2
248
31
20
26
21
1.98
6389--6505
35
3.2
37
73
6
112
31
15
23
29
1.95
7755--7785
16
1.9
16
93
0
53
67
0
0
32
0.91
19857--19973
6
18.3
6
69
23
71
1
23
2
72
1.06
19857--19978
19
6.7
18
71
20
78
1
23
2
72
1.06
19877--19946
8
8.2
8
73
17
52
2
24
1
71
1.08
19857--19973
52
2.3
51
93
1
198
1
23
2
72
1.06
19875--19946
13
5.5
13
73
12
58
2
23
1
72
1.06
21136--21188
13
4.4
11
77
17
52
5
11
1
81
0.94
33131--33163
13
2.4
14
85
5
50
78
9
3
9
1.05
38349--38446
47
2.1
47
88
3
144
29
12
4
54
1.56
42261--42356
27
3.6
26
77
4
93
17
26
32
23
1.97
42315--42397
41
2.0
41
86
4
114
22
28
25
22
1.99
42357--42481
54
2.3
54
83
0
151
23
22
29
24
1.99
43241--43346
24
4.4
24
75
0
95
35
26
15
22
1.93
43243--43346
48
2.2
48
94
0
181
36
26
15
21
1.93
43259--43394
48
2.8
48
88
0
182
36
29
16
17
1.93
43283--43360
24
3.2
24
75
0
84
33
28
21
16
1.95
48863--48894
16
2.0
16
100
0
64
75
6
0
18
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58049--58078
2
15.0
2
100
0
60
50
0
0
50
1.00
62495--62569
30
2.6
29
87
4
98
14
12
30
42
1.82
64301--64333
17
2.0
17
88
5
50
48
6
33
12
1.65
66412--66924
42
12.3
43
65
19
155
52
4
22
20
1.65
66453--66591
22
6.6
21
74
15
60
52
4
21
21
1.64
66454--66527
20
3.6
20
81
17
73
55
5
20
18
1.62
66517--66560
22
2.0
21
95
4
79
52
4
20
22
1.65
66392--66718
126
2.6
124
82
10
355
53
4
22
19
1.62
66648--66719
14
4.9
14
72
11
56
55
1
22
20
1.51
66664--66924
22
12.5
22
73
16
177
51
4
22
21
1.67
66716--66746
16
1.9
16
93
0
53
41
12
19
25
1.87
66881--66962
27
3.4
25
69
25
68
57
3
21
17
1.55
66870--66935
7
9.7
7
70
18
50
59
1
22
16
1.46
66875--66980
46
2.2
47
88
6
151
57
3
21
16
1.55
66906--66948
19
2.3
19
87
0
59
55
4
23
16
1.59
66924--67069
35
4.2
34
80
7
168
54
4
26
15
1.59
67108--67174
21
3.1
21
72
10
64
50
7
16
25
1.71
72890--72965
38
2.0
38
100
0
152
31
21
18
28
1.97
81070--81095
10
2.6
10
100
0
52
23
7
19
50
1.73
83837--83862
10
2.6
10
100
0
52
50
19
7
23
1.73
84774--84806
13
2.5
13
95
0
57
18
12
9
60
1.57
84805--84830
6
4.3
6
100
0
52
30
0
15
53
1.42

Tables:   1

The End!