Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01013976.1 Corchorus capsularis cultivar CVL-1 contig13997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10238

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
771--902
40
3.3
41
78
9
128
51
6
18
24
1.68
791--909
40
2.9
42
82
8
131
52
5
20
21
1.68
900--992
17
5.1
17
68
23
55
55
4
19
20
1.59
901--1168
43
6.9
36
67
26
113
53
5
19
20
1.66
974--1160
22
8.1
22
66
20
89
52
6
19
21
1.69
974--1233
43
5.6
43
70
22
134
53
6
19
21
1.67
1017--1065
15
3.0
17
82
11
66
55
8
14
22
1.65
937--1116
75
2.4
77
91
2
292
52
6
19
22
1.68
1049--1160
22
5.1
22
78
8
95
52
7
18
21
1.69
1119--1190
30
2.4
29
86
6
92
56
4
19
19
1.57
1085--1182
44
2.2
43
82
7
124
55
5
19
20
1.62
1104--1205
52
2.0
51
84
5
134
55
5
18
19
1.62
1159--1233
22
3.5
21
75
7
62
56
4
18
21
1.58
1091--1305
73
2.9
72
89
4
299
52
4
20
22
1.65
1019--1241
117
1.9
117
86
6
308
54
5
18
21
1.64
1229--1312
21
4.0
21
71
12
64
47
4
21
26
1.70
3284--3329
21
2.2
21
88
0
65
30
30
32
6
1.83
9627--9654
14
2.0
14
100
0
56
21
14
14
50
1.78
9842--9880
20
2.0
20
94
0
69
30
10
17
41
1.83

Tables:   1

The End!