Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014014.1 Corchorus capsularis cultivar CVL-1 contig14035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12856

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--35
2
16.5
2
100
0
66
48
0
0
51
1.00
142--167
2
13.0
2
100
0
52
50
0
0
50
1.00
1150--1194
14
3.1
15
83
6
56
48
2
15
33
1.57
1925--1949
13
1.9
13
100
0
50
48
0
0
52
1.00
1924--1957
15
2.4
14
90
9
59
50
0
0
50
1.00
2039--2097
20
3.0
20
78
12
68
54
6
0
38
1.27
8950--8985
18
2.0
18
88
0
54
27
11
33
27
1.91
9411--9643
108
2.2
108
86
3
319
21
22
21
33
1.97
9452--9673
108
2.0
109
84
2
286
26
22
21
29
1.99
9645--9944
41
7.5
40
78
8
299
37
21
19
22
1.94
9679--9821
77
1.8
77
90
1
232
37
20
19
22
1.95
9643--9909
119
2.3
117
95
2
482
39
20
19
21
1.93
9645--9909
78
3.4
78
77
10
290
39
20
19
21
1.93
10499--10697
46
4.2
45
70
12
137
33
24
16
26
1.96
10673--10715
20
2.2
20
86
0
59
23
27
23
25
2.00
10687--10789
45
2.3
45
83
3
118
28
27
16
28
1.97
10775--10861
17
4.8
17
83
12
102
21
31
20
26
1.98
10777--10861
37
2.3
37
100
0
170
22
31
20
25
1.98
11007--11114
45
2.4
44
90
6
164
26
25
20
27
1.99
11085--11147
33
1.9
33
87
6
92
20
23
23
31
1.98
11620--11762
46
3.1
46
84
3
189
28
24
15
31
1.95

Tables:   1

The End!