Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014125.1 Corchorus capsularis cultivar CVL-1 contig14146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23064

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
789--816
14
2.0
14
100
0
56
14
35
14
35
1.86
754--816
33
1.9
33
83
6
83
19
25
19
36
1.94
7850--7906
30
1.9
30
96
0
105
33
19
28
19
1.96
16720--16862
36
4.1
36
84
6
161
27
26
9
36
1.88
16769--16908
32
4.2
32
88
5
183
30
24
10
35
1.89
16769--16908
64
2.1
66
88
7
205
30
24
10
35
1.89
16814--17055
37
6.8
35
84
8
203
25
24
10
39
1.87
16882--17055
74
2.3
73
89
3
267
23
22
10
42
1.85
17047--17127
36
2.2
36
82
4
92
19
18
13
48
1.81
17102--17198
35
2.7
35
91
1
149
25
10
12
51
1.71
17110--17166
20
3.0
20
66
23
52
22
12
12
52
1.72
17136--17196
20
3.3
20
67
21
60
29
8
11
50
1.67
17205--17315
40
2.7
41
87
2
161
24
19
9
45
1.80
17305--18082
37
20.8
37
86
2
986
28
19
7
44
1.79
17303--18082
75
10.4
75
88
2
1034
28
19
7
44
1.79
18056--18170
40
2.7
44
78
12
139
30
17
10
41
1.83

Tables:   1

The End!