Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014128.1 Corchorus capsularis cultivar CVL-1 contig14149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60100

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1069--1130
31
2.0
32
84
9
83
38
16
32
12
1.86
2923--2956
1
34.0
1
100
0
68
100
0
0
0
0.00
9838--9898
12
4.8
12
78
9
50
36
16
1
45
1.57
9848--9896
12
3.8
13
86
10
57
32
20
2
44
1.63
17219--17246
2
14.0
2
100
0
56
50
0
0
50
1.00
22175--22244
22
3.0
24
87
8
108
20
24
34
21
1.97
22437--22523
44
2.0
43
88
6
131
27
16
26
29
1.96
26952--26981
11
2.7
11
94
0
51
40
0
20
40
1.52
31388--31469
31
2.7
31
84
1
112
39
18
18
24
1.92
37326--37364
2
19.5
2
89
0
60
43
0
2
53
1.14
45277--45327
21
2.4
22
81
15
63
19
13
23
43
1.87
50634--50659
10
2.6
10
100
0
52
23
7
19
50
1.73
49988--51906
639
3.0
639
98
0
3644
32
18
16
31
1.93
56577--56606
2
15.0
2
100
0
60
50
0
0
50
1.00
56807--57091
149
1.9
149
84
0
381
28
20
16
35
1.93
56974--57293
167
1.9
167
80
5
369
26
16
20
36
1.94

Tables:   1

The End!