Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014141.1 Corchorus capsularis cultivar CVL-1 contig14162, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9597

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123--300
50
3.5
50
93
1
302
22
14
32
30
1.93
1143--1370
38
5.9
37
77
15
214
35
16
13
34
1.87
1142--1370
79
2.9
77
85
11
290
35
16
13
34
1.88
3469--3573
35
3.1
31
78
15
102
37
19
7
36
1.80
3481--3822
35
9.9
35
76
11
260
36
16
8
38
1.80
3522--3822
19
16.4
19
64
17
82
36
15
8
38
1.79
3614--3671
21
3.0
20
77
10
66
34
13
3
48
1.60
3483--3766
109
2.6
107
83
6
324
36
16
7
39
1.78
3688--3801
60
1.9
60
90
0
183
36
15
7
39
1.77
3641--3825
95
1.9
97
91
4
304
36
16
9
37
1.80
6372--6410
20
2.0
20
89
0
60
41
20
10
28
1.85

Tables:   1

The End!