Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014299.1 Corchorus capsularis cultivar CVL-1 contig14320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80613

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4196--4236
20
2.0
20
85
0
55
48
7
7
36
1.59
5510--5535
10
2.6
10
100
0
52
50
19
7
23
1.73
13240--13462
71
3.1
70
82
1
248
42
9
23
24
1.83
13434--13625
41
4.7
41
85
3
262
40
10
21
27
1.86
13432--13625
82
2.4
81
89
2
300
40
10
22
26
1.86
13604--13963
37
9.9
37
83
8
409
45
9
19
25
1.79
13831--13889
29
2.0
29
100
0
118
49
10
16
23
1.77
13794--13923
65
2.0
66
90
1
208
46
9
18
26
1.79
13755--13963
102
2.0
105
87
4
309
46
10
18
24
1.79
13604--13957
178
1.9
182
84
7
477
45
9
19
25
1.80
13976--14227
41
6.5
40
75
12
256
44
11
20
23
1.84
14001--14256
41
6.8
35
73
13
147
45
10
18
25
1.81
13976--14188
76
2.8
76
92
2
356
44
11
19
24
1.83
14050--14259
117
1.8
115
88
2
321
44
11
18
25
1.83
14230--14314
36
2.4
35
83
11
95
50
10
10
28
1.70
14349--14723
37
10.4
37
82
6
387
41
8
26
24
1.82
14360--14704
74
4.8
74
84
5
433
41
7
26
24
1.81
14351--14704
149
2.5
143
82
8
434
41
7
27
24
1.81
14350--14754
69
5.7
72
81
8
363
40
7
26
24
1.83
14697--14768
32
2.2
32
97
0
135
36
9
23
30
1.87
14714--14898
36
5.2
36
75
15
156
42
9
20
27
1.83
14774--14930
73
2.1
74
91
2
253
50
9
16
22
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24580--24605
3
8.7
3
100
0
52
30
0
0
69
0.89
38073--38106
17
2.0
17
94
0
59
23
5
14
55
1.61
39909--39949
20
2.0
20
100
0
82
39
26
0
34
1.57
45611--45658
22
2.2
22
96
0
87
33
18
2
45
1.61
47234--47280
24
2.0
24
91
0
76
36
12
14
36
1.85
47653--47682
15
2.0
15
93
0
51
36
0
13
50
1.42
52168--53417
35
35.0
34
83
6
1259
46
11
16
25
1.81
52174--53417
71
17.4
71
83
8
1374
46
11
16
25
1.81
52178--53417
106
11.6
106
83
7
1333
46
11
16
25
1.81
57301--57346
24
1.9
24
82
8
58
60
6
23
8
1.49
65398--65448
12
4.0
12
75
20
50
80
3
5
9
1.01
65407--65462
22
2.6
22
86
8
71
78
5
8
7
1.08
65398--65460
28
2.3
27
84
12
85
79
4
7
7
1.05
70097--70171
30
2.5
30
80
4
89
28
30
29
12
1.92
73152--73299
53
2.8
53
86
4
208
41
17
12
28
1.86
75243--75315
21
3.5
21
94
0
128
13
35
9
41
1.77
75726--75816
30
3.0
30
80
4
94
45
28
7
18
1.77

Tables:   1

The End!