Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014300.1 Corchorus capsularis cultivar CVL-1 contig14321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25229

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6363--6406
20
2.3
19
92
4
70
29
20
2
47
1.62
11126--11326
53
4.0
53
77
10
213
44
11
19
23
1.83
11118--11307
98
1.9
98
87
2
274
44
12
19
24
1.84
11439--11631
49
3.6
55
76
18
199
49
5
21
23
1.69
11602--11664
32
2.1
31
82
8
76
57
3
25
14
1.52
11602--11785
36
5.3
33
75
10
113
57
2
26
14
1.51
11713--11806
22
4.7
22
70
20
80
53
3
26
17
1.59
11651--11785
36
3.7
36
86
1
171
56
2
25
14
1.53
11711--11827
58
2.0
58
90
3
182
54
3
25
16
1.57
11672--11844
94
1.9
90
84
7
231
56
2
26
15
1.53
11766--11901
36
4.4
32
80
17
139
58
2
22
16
1.51
12361--12399
6
6.5
6
100
0
78
53
15
0
30
1.42
15106--15144
6
6.5
6
100
0
78
53
15
0
30
1.42
16087--16112
10
2.6
10
100
0
52
23
7
19
50
1.73
16687--16726
20
2.0
19
90
9
62
65
7
10
17
1.46
17166--17227
27
2.3
27
97
0
115
46
9
14
29
1.76
17146--17218
23
3.0
23
78
18
76
41
12
13
32
1.82
17234--17275
10
4.3
10
80
17
52
42
26
0
30
1.55
17231--17271
19
2.1
20
86
13
59
46
21
0
31
1.52
17219--17285
29
2.3
30
84
7
102
46
22
2
28
1.66
19980--20027
23
2.1
23
100
0
96
54
16
8
20
1.68
20525--20635
56
2.0
57
89
1
170
31
18
25
25
1.97

Tables:   1

The End!