genome.fa.s14336.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014336.1 Corchorus capsularis cultivar CVL-1 contig14357, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63118

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2909--2947	18	2.2	18	90	0	60	33	2	20	43	1.65
2970--3008	18	2.2	18	100	0	78	35	5	20	38	1.75
2988--3547	43	12.5	43	80	12	598	37	6	18	37	1.78
3182--3305	59	2.1	59	100	0	248	38	4	18	37	1.72
3225--3262	16	2.4	16	100	0	76	42	0	18	39	1.50
2874--3305	61	7.1	59	75	11	333	37	6	18	37	1.77
2836--3160	105	3.0	102	72	16	262	36	6	19	37	1.78
3139--3369	102	2.3	100	93	0	291	37	6	19	37	1.77
3479--3582	35	3.0	35	89	0	145	37	9	18	34	1.83
7417--7446	5	6.0	5	92	0	51	76	0	23	0	0.78
8646--8752	35	3.1	35	90	0	160	28	16	27	28	1.97
8761--9127	88	4.0	89	81	11	427	26	16	26	29	1.97
8883--9074	99	1.9	101	87	5	282	27	15	27	30	1.96
8992--9161	92	1.8	92	81	7	211	27	16	25	30	1.97
9448--9500	28	1.9	28	92	3	90	16	18	24	39	1.91
9979--10021	18	2.5	16	85	11	50	6	20	9	62	1.48
14138--14176	18	2.2	18	100	0	78	35	5	20	38	1.75
14094--14219	61	2.0	62	96	1	236	37	7	19	36	1.79
14156--14576	43	9.5	43	89	6	644	36	6	18	38	1.77
14556--14590	18	1.9	18	100	0	70	34	5	20	40	1.76
14513--14634	61	2.0	61	95	0	217	37	5	18	37	1.75
14050--14758	104	6.7	105	77	12	634	37	6	18	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14574--14690	43	2.7	42	90	2	180	39	6	16	37	1.75
14674--14713	21	1.9	21	89	0	62	45	2	17	35	1.62
14682--14724	21	2.0	21	86	0	59	37	2	18	41	1.63
14719--14777	19	3.3	19	72	13	61	35	8	16	38	1.80
14435--14791	147	2.4	145	82	6	373	39	6	17	36	1.75
14718--14821	35	3.0	35	84	0	118	37	7	18	36	1.79
18123--18176	21	2.6	21	85	5	65	24	42	18	14	1.88
20117--20297	68	2.6	71	85	7	269	23	27	18	30	1.98
20366--20591	48	4.7	48	88	0	301	20	26	16	35	1.94
20702--21462	62	12.4	62	83	3	799	25	25	15	34	1.94
33142--33188	24	2.0	24	83	8	60	57	10	6	25	1.56
36238--36317	28	2.8	28	88	5	106	26	23	13	36	1.92
37009--37089	29	2.7	29	90	3	117	38	12	24	24	1.90
45386--45426	10	3.9	11	81	9	50	26	21	9	41	1.84
45386--45426	21	2.0	21	85	0	55	26	21	9	41	1.84
51419--51508	44	2.1	43	87	8	130	31	5	8	54	1.54
53282--53315	2	17.0	2	100	0	68	50	0	0	50	1.00
55198--55235	2	19.0	2	100	0	76	50	0	0	50	1.00
55463--55499	6	6.2	6	100	0	74	32	0	18	48	1.49
57049--57106	2	29.5	2	87	3	82	51	1	1	44	1.21
57102--57134	7	4.7	7	100	0	66	57	12	0	30	1.35

Tables:   1

The End!