Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014421.1 Corchorus capsularis cultivar CVL-1 contig14442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47419

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4384--4466
41
2.0
41
100
0
166
28
14
14
42
1.85
12584--12710
62
2.0
62
93
0
218
48
14
12
25
1.79
15344--15383
20
2.0
20
100
0
80
55
15
5
25
1.60
15707--15742
18
2.0
18
94
0
63
36
19
5
38
1.75
15884--16116
70
3.2
70
83
10
297
37
12
0
49
1.44
15884--16122
78
3.2
77
90
7
350
37
12
0
50
1.43
16823--16977
70
2.2
70
86
4
215
34
12
1
51
1.48
18464--18504
3
13.7
3
94
0
73
2
34
0
63
1.08
19108--19157
24
2.1
23
92
3
82
10
18
24
48
1.78
22622--22683
12
5.2
12
88
7
90
16
33
3
46
1.63
23848--23881
15
2.3
15
94
0
59
11
8
0
79
0.94
24544--24586
9
4.6
9
80
8
50
20
9
23
46
1.79
28067--28429
49
7.4
49
85
2
471
24
31
12
31
1.92
30665--30706
22
2.0
21
95
4
75
54
0
0
45
0.99
30697--30754
15
3.7
17
73
17
54
46
3
8
41
1.51
30667--30706
2
21.0
2
87
10
57
52
0
0
47
1.00
30701--30732
15
2.1
15
100
0
64
46
6
12
34
1.67
33389--33492
51
2.0
51
100
0
208
29
3
23
43
1.71
34799--34842
22
1.9
24
86
9
65
56
2
38
2
1.24
35592--35620
13
2.2
13
100
0
58
27
0
0
72
0.85
37422--37517
34
2.8
34
98
0
183
45
10
16
27
1.80
40768--40908
66
2.1
66
89
0
219
16
8
51
24
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46531--46574
20
2.2
20
84
8
54
56
2
4
36
1.32
47083--47109
2
13.5
2
100
0
54
0
48
0
51
1.00

Tables:   1

The End!