genome.fa.s14465.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014465.1 Corchorus capsularis cultivar CVL-1 contig14486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192356

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22674--23156	249	2.0	246	87	2	700	38	20	21	19	1.93
24928--24961	2	17.0	2	100	0	68	50	0	0	50	1.00
44921--44956	12	2.9	12	91	4	54	38	11	0	50	1.38
44862--44937	38	2.0	38	100	0	152	44	7	5	42	1.56
45054--45282	78	3.1	76	90	6	344	36	13	0	50	1.41
47512--47544	17	2.0	17	94	5	59	54	6	18	21	1.64
48510--48551	21	2.0	21	90	0	66	42	9	14	33	1.78
52215--52247	17	2.0	17	94	5	59	54	6	18	21	1.64
52668--52942	109	2.5	110	91	4	430	38	10	2	48	1.49
54337--54382	23	2.0	23	100	0	92	17	17	26	39	1.91
55561--55586	4	6.5	4	100	0	52	26	0	0	73	0.84
56626--56656	1	31.0	1	100	0	62	0	0	0	100	0.00
66183--66238	27	2.1	27	96	0	103	12	26	3	57	1.52
69223--69261	18	2.2	18	85	0	51	10	5	28	56	1.54
72695--72733	18	2.1	19	85	4	53	15	20	30	33	1.94
84492--84558	31	2.2	31	100	0	134	31	2	17	47	1.63
90518--90550	15	2.4	14	85	14	50	0	12	0	87	0.53
91540--91571	2	16.0	2	100	0	64	50	0	0	50	1.00
107655--107704	1	50.0	1	83	0	64	0	0	8	92	0.40
107655--107701	15	3.3	15	94	5	80	0	0	8	91	0.42
110165--110189	6	4.2	6	100	0	50	0	48	0	52	1.00
116039--116087	26	2.0	25	84	8	64	38	12	12	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118355--118388	1	34.0	1	100	0	68	0	0	0	100	0.00
138491--138535	1	45.0	1	100	0	90	0	0	0	100	0.00
140920--140972	26	2.0	26	100	0	106	22	26	22	28	1.99
141624--142142	214	2.4	215	84	1	648	28	17	15	39	1.89
143348--143391	3	14.3	3	86	13	63	36	0	0	63	0.95
143349--143392	10	4.2	11	83	16	58	38	0	0	61	0.96
143349--143403	25	2.2	25	84	12	69	38	3	0	58	1.16
143543--143699	79	2.0	79	88	0	233	38	10	16	34	1.84
144165--144433	136	2.0	135	91	5	436	38	12	10	39	1.76
154584--154656	28	2.6	28	91	6	121	43	9	9	36	1.70
169787--169814	12	2.3	12	100	0	56	75	10	0	14	1.06
172174--172246	29	2.5	29	76	8	85	36	15	27	20	1.92
177904--177947	18	2.5	18	82	14	56	18	0	20	61	1.35
179237--179342	39	2.6	41	89	4	153	24	24	16	33	1.96
179266--179339	20	3.8	20	75	18	75	22	28	14	33	1.94
179899--179932	14	2.5	13	90	9	59	2	14	0	82	0.79
184738--184776	3	13.0	3	100	0	78	0	33	0	66	0.92
187735--188004	51	5.2	51	84	7	344	37	16	18	27	1.92
187900--188006	50	2.1	50	96	0	196	35	16	19	28	1.94
187743--188006	109	2.5	109	86	7	357	36	17	18	27	1.93
188241--188269	14	2.0	15	93	6	51	13	13	10	62	1.55
188798--191327	656	3.9	643	80	7	2544	36	16	13	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188771--192356	327	11.0	324	71	12	2025	36	16	14	32	1.89
189879--191871	983	2.0	977	81	6	2329	36	15	14	32	1.88
190862--192334	656	2.2	645	80	8	1665	35	16	15	32	1.90

Tables:   1

The End!