Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014479.1 Corchorus capsularis cultivar CVL-1 contig14500, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50230

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1723
336
5.1
329
80
7
1928
31
16
16
36
1.91
13--1723
670
2.6
666
89
3
2548
31
16
16
36
1.91
1722--4384
338
8.0
332
80
7
2699
32
15
16
35
1.90
2690--4384
671
2.5
670
86
3
2302
32
15
15
35
1.90
4384--7674
331
9.9
330
79
5
3179
31
16
16
35
1.91
9650--9674
13
1.9
13
100
0
50
52
8
8
32
1.60
26390--26468
32
2.5
30
81
8
77
29
35
22
12
1.91
26423--26474
23
2.3
23
82
0
68
30
36
21
11
1.89
27310--27394
16
5.4
16
82
12
88
32
38
22
5
1.78
27316--27364
25
2.0
25
84
15
66
30
36
26
6
1.81
27332--27380
9
5.9
9
77
18
52
36
36
20
6
1.78
28134--28195
31
2.0
31
96
0
115
24
9
32
33
1.88
28790--29032
107
2.3
105
92
2
391
41
9
8
40
1.68
48346--48417
35
2.1
35
100
0
144
33
22
8
36
1.84
49229--49636
186
2.2
186
96
0
753
41
5
15
37
1.70
49549--49593
24
1.9
24
86
4
65
33
0
28
37
1.58

Tables:   1

The End!