genome.fa.s14510.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014510.1 Corchorus capsularis cultivar CVL-1 contig14531, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213783

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3500--3534	16	2.1	17	89	5	54	28	5	5	60	1.43
3499--3534	17	2.1	17	90	10	56	27	5	5	61	1.41
3862--3887	2	13.0	2	100	0	52	50	0	0	50	1.00
4509--4543	16	2.2	16	90	10	54	42	0	2	54	1.15
14870--14902	2	16.5	2	100	0	66	51	0	0	48	1.00
17997--18033	2	19.0	2	94	5	67	48	0	0	51	1.00
18000--18034	17	2.1	17	100	0	70	45	0	0	54	0.99
27262--27302	22	1.9	22	85	5	57	26	4	4	63	1.35
31832--31867	17	2.1	17	94	0	63	25	0	36	38	1.56
36454--36484	1	31.0	1	100	0	62	0	0	0	100	0.00
46694--46914	57	3.9	57	83	6	268	43	21	20	14	1.87
50724--50996	26	11.8	24	73	21	235	29	8	22	39	1.84
50724--50996	49	5.9	47	72	20	227	29	8	22	39	1.84
50793--50825	16	2.1	16	94	0	57	39	6	24	30	1.79
50770--50851	42	2.0	41	90	6	132	32	8	21	36	1.84
50744--50939	65	3.0	65	96	0	356	30	9	22	37	1.86
55343--55465	63	2.0	62	95	1	219	30	13	16	39	1.87
56545--56591	11	3.9	12	78	10	51	34	17	10	38	1.84
63440--63493	28	1.9	28	96	0	99	35	12	16	35	1.87
72249--72329	42	1.9	42	92	0	135	37	9	20	32	1.86
72377--72487	33	3.4	33	76	16	106	17	38	30	13	1.88
72710--72750	21	2.0	21	85	0	55	41	9	24	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73003--73147	74	2.0	74	95	0	263	20	30	8	40	1.82
73154--73192	20	1.9	21	94	5	71	30	0	10	58	1.31
84282--84389	51	2.1	51	94	0	189	10	33	21	35	1.87
84450--84749	127	2.4	122	81	7	361	8	33	23	34	1.86
84447--84767	61	5.2	60	85	4	354	8	32	23	36	1.85
85341--85371	16	1.9	16	100	0	62	35	0	25	38	1.56
85483--85542	29	2.2	29	85	8	81	25	6	6	61	1.45
85624--85667	14	2.9	15	87	12	56	38	4	0	56	1.20
85640--85691	15	3.3	15	84	10	52	44	1	0	53	1.11
88325--91215	322	9.0	321	86	2	3748	33	15	16	34	1.90
87180--91215	960	4.1	956	83	5	4475	33	14	16	35	1.89
90677--91699	531	1.9	524	83	4	1255	33	16	15	34	1.90
91208--93864	651	4.1	646	86	4	3425	34	14	16	34	1.89
91208--93864	323	8.2	321	87	4	3341	34	14	16	34	1.89
93945--94045	31	3.4	31	74	13	120	21	21	21	34	1.97
93945--94105	59	2.7	60	89	0	234	26	19	19	34	1.96
94486--94560	33	2.3	33	95	0	132	18	36	30	14	1.91
94621--94771	33	4.6	33	84	3	196	13	28	40	17	1.88
95220--97904	31	96.1	26	80	14	398	33	21	16	28	1.95
95342--97514	31	76.0	31	81	11	2022	33	20	17	28	1.95
95267--97948	57	47.8	57	80	13	2157	33	21	16	28	1.95
97865--97940	36	2.1	36	92	0	125	30	32	13	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97901--97969	26	2.7	25	82	4	84	33	26	15	24	1.95
97962--98042	33	2.5	33	83	0	90	33	14	19	32	1.92
98040--98148	57	1.9	57	83	7	141	33	18	20	27	1.96
98792--99261	231	2.0	231	92	1	791	35	21	18	24	1.95
101286--101320	14	2.4	14	90	4	52	5	14	25	54	1.62
102091--102187	34	2.9	34	100	0	194	23	21	15	39	1.92
102204--102237	2	17.0	2	100	0	68	50	0	0	50	1.00
109352--109418	31	2.2	30	86	2	89	35	13	11	38	1.82
120669--120707	3	13.0	3	100	0	78	66	0	0	33	0.92
121662--121695	2	17.0	2	100	0	68	50	0	0	50	1.00
129930--129969	21	1.9	21	85	10	55	67	5	12	15	1.38
137137--137182	18	2.5	19	82	13	60	47	0	2	50	1.13
138117--138227	31	3.5	31	80	2	132	30	25	26	18	1.98
139419--139469	27	1.9	27	92	4	86	54	7	25	11	1.63
140499--140523	2	12.5	2	100	0	50	52	0	0	48	1.00
145588--145626	16	2.2	19	86	13	57	38	0	2	58	1.12
150462--150498	6	5.8	6	93	6	56	83	0	16	0	0.64
150462--150498	13	2.9	12	88	11	56	83	0	16	0	0.64
150464--150498	7	5.3	7	96	3	56	85	0	14	0	0.59
161388--161418	10	3.2	10	95	4	55	29	29	0	41	1.56
164268--164302	16	2.2	16	100	0	70	17	0	40	42	1.49
168708--168732	3	8.3	3	100	0	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178527--178551	12	2.1	12	100	0	50	36	0	0	64	0.94
180097--180145	22	2.2	22	85	7	64	30	14	4	51	1.61
180170--180231	23	2.8	22	80	4	61	40	12	12	33	1.82
180171--180341	22	7.7	22	71	15	102	38	14	12	34	1.84
180286--180386	23	4.5	22	78	10	89	38	14	8	37	1.78
180286--180409	45	2.8	46	80	10	125	37	13	8	40	1.76
180414--180520	22	4.9	22	73	4	108	30	18	8	42	1.80
180414--180520	44	2.4	43	84	6	135	30	18	8	42	1.80
180906--180973	16	4.3	15	71	10	55	13	14	33	38	1.85
182085--182123	6	6.5	6	100	0	78	64	35	0	0	0.94
194652--194679	6	4.7	6	100	0	56	82	0	17	0	0.68
194904--194942	3	13.0	3	86	0	51	58	2	35	2	1.25
195731--195758	2	14.0	2	100	0	56	50	0	0	50	1.00
196609--196823	36	6.0	36	87	2	283	22	40	26	11	1.88
198054--198103	21	2.4	21	93	0	82	10	48	0	42	1.37
208400--208430	16	1.9	16	93	0	53	61	3	12	22	1.46
210731--210779	24	2.0	25	92	4	82	38	16	6	38	1.73
211214--211460	78	3.2	78	91	1	379	36	12	0	50	1.44
211699--211737	19	2.1	19	100	0	78	33	5	0	61	1.18
212599--212676	40	2.0	40	94	0	138	42	7	7	42	1.62

Tables:   1

The End!