Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014519.1 Corchorus capsularis cultivar CVL-1 contig14540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52678

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3688--3786
48
2.1
48
98
0
189
38
25
18
18
1.93
7251--7281
2
15.5
2
100
0
62
48
0
0
51
1.00
8982--9058
30
2.6
30
82
14
95
33
12
22
31
1.92
17531--17642
49
2.3
49
100
0
224
28
20
15
35
1.93
19090--19169
40
2.0
40
95
0
142
47
10
18
23
1.79
27625--30638
333
9.1
326
77
9
2180
38
15
13
33
1.86
27567--31608
672
6.0
662
75
10
2851
37
14
13
33
1.86
32024--32053
15
1.9
16
93
6
53
53
3
0
43
1.17
32162--32214
27
2.0
27
85
7
72
64
5
9
20
1.44
35332--35396
32
2.0
32
100
0
130
27
23
9
40
1.85
38194--40204
322
6.0
327
72
11
1004
36
15
15
32
1.88
39784--40628
418
2.0
418
86
3
1164
37
13
13
36
1.83
41200--41427
85
2.7
85
95
0
402
43
13
5
38
1.66
41341--44646
332
9.9
332
78
6
3147
36
14
14
33
1.88
41341--44646
665
5.0
659
83
5
4248
36
14
14
33
1.88
50705--52677
328
5.9
331
82
5
2093
36
15
15
32
1.89
50705--52678
658
3.0
655
83
5
2373
36
15
15
33
1.89

Tables:   1

The End!