Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014551.1 Corchorus capsularis cultivar CVL-1 contig14572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157348

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100--148
23
2.1
23
100
0
98
36
8
16
38
1.78
111--158
23
2.3
20
82
13
53
33
4
18
43
1.69
5138--5176
12
3.2
12
77
0
51
5
20
25
48
1.70
6910--6944
13
2.7
13
100
0
70
5
14
34
45
1.68
7047--7076
1
30.0
1
100
0
60
0
0
0
100
0.00
7764--7803
20
2.0
20
90
0
62
22
20
20
37
1.94
8128--8241
58
1.9
60
96
3
214
39
11
16
32
1.84
8226--8252
11
2.5
11
100
0
54
70
11
7
11
1.34
14532--14597
34
2.0
33
90
3
105
33
19
15
31
1.93
32862--32889
6
4.7
6
100
0
56
85
14
0
0
0.59
33427--33460
9
3.7
9
88
4
50
0
35
0
64
0.94
35227--35258
16
2.0
16
93
0
55
25
0
3
71
1.00
56031--56183
34
4.6
34
87
1
186
14
37
33
14
1.86
56298--56339
14
2.7
15
82
14
50
54
2
28
14
1.52
56376--56405
2
15.0
2
100
0
60
50
0
0
50
1.00
56600--64682
322
25.2
321
85
4
10235
34
16
14
33
1.90
56600--66970
642
16.2
643
83
6
11158
34
16
14
33
1.90
68487--68523
2
18.5
2
100
0
74
48
0
0
51
1.00
72979--73108
65
2.0
65
96
0
242
38
17
13
30
1.88
85264--85291
2
14.0
2
100
0
56
50
0
0
50
1.00
86029--86058
14
2.1
14
93
0
51
43
10
0
46
1.37
89017--89089
31
2.4
31
85
0
92
41
16
13
28
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89689--89721
2
16.5
2
100
0
66
48
0
0
51
1.00
92178--92225
22
2.3
20
86
10
62
39
25
16
18
1.91
92145--92247
53
1.9
53
90
0
161
35
27
20
16
1.94
92197--92294
31
3.2
31
82
1
117
32
26
21
19
1.97
93432--93476
14
2.9
16
80
16
58
17
26
2
53
1.56
97674--97898
112
2.0
112
100
0
450
31
15
16
36
1.90
108062--108173
56
2.0
56
100
0
224
33
21
10
33
1.88
108414--108444
15
2.0
16
93
6
55
67
6
6
19
1.35
149092--149130
15
2.5
15
91
4
60
76
10
5
7
1.13
149091--149131
16
2.6
16
84
11
57
78
9
4
7
1.10
149091--149134
15
2.7
17
79
13
56
75
11
4
9
1.19
150100--150145
20
2.5
17
78
18
56
23
0
50
26
1.50
150101--150138
20
1.9
20
94
0
67
23
0
52
23
1.47
150591--150628
15
2.5
15
95
0
67
13
76
0
10
1.02
151444--152266
326
2.5
321
76
13
785
33
18
14
32
1.92
151751--152829
560
1.9
559
85
3
1476
34
17
14
32
1.91
152310--154867
655
3.9
655
88
3
3507
34
17
13
33
1.89

Tables:   1

The End!