Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014560.1 Corchorus capsularis cultivar CVL-1 contig14581, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78442

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
918--1047
45
2.9
46
90
3
210
37
20
37
3
1.71
974--1050
20
3.7
20
71
17
66
40
18
37
3
1.69
1011--1202
52
3.7
52
93
1
323
30
28
39
2
1.68
1179--1252
24
3.1
24
88
0
85
44
28
24
2
1.67
2110--2212
45
2.6
39
75
20
113
34
15
27
22
1.94
2134--2225
45
2.0
45
93
0
157
31
21
22
23
1.98
8284--8311
13
2.2
13
100
0
56
64
14
21
0
1.29
9789--9847
30
2.0
30
89
0
91
62
13
6
16
1.51
10344--10376
3
11.0
3
100
0
66
66
0
33
0
0.92
10372--10397
4
6.5
4
100
0
52
76
0
23
0
0.78
11115--11169
28
2.0
27
82
10
67
49
20
7
23
1.74
18285--18341
30
2.0
28
89
6
87
8
15
61
14
1.56
19374--19502
65
2.0
65
89
7
199
14
21
12
51
1.75
21704--21748
19
2.3
19
92
7
72
35
13
8
42
1.75
23627--23651
13
1.9
13
100
0
50
44
8
40
8
1.63
25691--25725
16
2.2
16
89
0
52
40
0
2
57
1.14
28737--28821
21
4.1
21
78
3
100
14
36
37
11
1.82
49414--49469
26
2.1
27
96
3
105
39
17
3
39
1.67
58511--58740
120
1.9
120
90
1
363
31
14
21
31
1.94
58774--58804
15
2.1
15
100
0
62
48
6
12
32
1.67
69984--70024
6
6.8
6
97
0
73
0
46
2
51
1.14
72162--72202
20
2.0
20
85
0
55
9
17
12
60
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74020--74057
12
3.1
12
85
7
58
13
0
7
78
0.94
76150--76334
93
2.0
93
95
0
334
33
15
15
35
1.90
76681--76751
37
1.9
37
91
0
115
19
15
9
54
1.68
76881--76913
1
33.0
1
100
0
66
0
0
0
100
0.00

Tables:   1

The End!