Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014888.1 Corchorus capsularis cultivar CVL-1 contig14909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148822

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5203--5590
22
17.8
22
71
9
147
35
16
11
37
1.84
5375--5477
44
2.3
44
93
0
170
34
17
12
34
1.88
5375--5535
66
2.5
66
84
3
191
33
16
13
36
1.88
5524--5579
23
2.5
23
94
2
96
32
8
10
48
1.69
5678--5740
22
2.9
22
88
2
92
34
17
12
34
1.88
5414--5893
263
1.8
264
96
0
890
36
17
11
34
1.86
5787--5845
23
2.6
22
86
5
82
32
10
13
44
1.77
6669--6747
22
3.7
21
83
5
95
36
11
13
37
1.81
6549--7656
44
24.9
44
64
15
142
37
9
16
36
1.81
6558--6725
91
1.8
91
81
5
205
36
10
14
38
1.80
6922--7576
22
29.6
22
67
17
209
37
9
16
36
1.81
7625--7675
22
2.3
22
83
6
59
39
9
15
35
1.81
9817--9852
15
2.3
15
95
4
63
2
13
25
58
1.49
10847--10871
13
1.9
13
100
0
50
32
8
16
44
1.76
12032--12073
19
2.3
18
83
4
57
45
0
45
9
1.36
19695--19742
19
2.5
20
86
10
64
83
4
6
6
0.91
20936--21005
30
2.3
31
82
7
90
38
18
15
27
1.91
44007--44121
59
1.9
59
85
5
160
29
13
14
41
1.85
44767--44820
26
2.0
27
92
7
92
40
7
14
37
1.74
55888--55944
27
2.0
29
90
6
91
49
5
7
38
1.53
56453--56602
74
2.0
74
98
0
291
40
14
17
28
1.89
65258--65292
2
17.5
2
100
0
70
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67761--67822
31
2.0
31
100
0
124
45
12
16
25
1.83
68261--68540
147
1.9
147
89
1
436
30
19
17
32
1.95
71641--71794
61
2.6
61
85
4
197
16
25
28
29
1.96
71653--71798
30
4.8
31
88
2
199
16
26
27
29
1.97
71776--71822
24
2.0
24
95
0
85
12
23
29
34
1.92
71778--71834
24
2.4
24
84
0
78
15
26
28
29
1.96
72728--72820
31
3.1
30
87
7
136
39
12
15
32
1.85
73649--73712
31
2.1
31
88
5
96
31
14
10
43
1.79
73836--73915
29
2.7
29
82
3
88
38
12
17
31
1.87
75646--75719
37
2.0
37
97
0
139
36
2
10
50
1.52
76803--76827
1
25.0
1
100
0
50
100
0
0
0
0.00
82153--82196
21
2.1
21
86
0
61
22
27
11
38
1.88
82242--82339
33
3.0
33
92
3
153
15
40
31
12
1.84
83916--83945
5
6.2
5
92
7
53
0
16
0
83
0.65
84833--85643
202
4.0
202
98
0
1561
26
11
17
44
1.83
89731--89772
19
2.2
20
82
4
50
9
9
7
73
1.24
99405--99432
14
2.0
14
100
0
56
50
0
28
21
1.49
102440--102498
30
2.0
30
93
0
100
40
5
5
49
1.47
102818--102893
31
2.5
30
79
6
82
34
11
17
36
1.86
103304--103335
6
5.3
6
96
0
55
0
46
15
37
1.46
107707--107798
38
2.4
38
100
0
184
21
11
7
58
1.58
116227--116271
13
3.0
16
68
18
51
42
20
6
31
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116589--116636
3
16.0
3
100
0
96
66
0
0
33
0.92
117837--117879
10
4.3
10
77
11
52
51
2
11
34
1.51
117799--117879
30
2.8
30
94
5
141
53
3
9
33
1.52
117847--117886
20
2.0
20
100
0
80
55
5
10
30
1.54
126647--126671
6
4.2
6
100
0
50
0
0
36
64
0.94
138069--138110
6
6.8
6
89
5
66
80
0
2
16
0.81
138070--138110
13
3.2
13
93
3
66
82
0
2
14
0.76
138069--138110
19
2.3
19
91
4
68
80
0
2
16
0.81
141907--141976
29
2.4
29
82
2
86
21
22
17
38
1.93
142279--142334
29
2.0
28
86
10
80
25
1
35
37
1.66
144929--144979
22
2.3
22
86
0
66
39
11
7
41
1.71
144993--145196
101
2.1
97
94
3
354
29
12
16
42
1.84
145471--145519
21
2.3
20
79
6
53
24
2
6
67
1.24
145952--146002
22
2.3
22
86
0
66
39
11
7
41
1.71
146977--147820
330
2.6
328
82
6
967
35
13
13
37
1.85

Tables:   1

The End!