genome.fa.s15085.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015085.1 Corchorus capsularis cultivar CVL-1 contig15106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72194

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1206	455	2.6	455	93	1	2004	25	17	21	34	1.95
1313--1667	152	2.3	153	84	6	441	25	13	20	40	1.88
3292--3380	47	1.9	46	93	2	151	32	37	12	17	1.88
5420--5463	10	4.3	10	82	5	52	34	0	9	56	1.31
16259--16283	2	12.5	2	100	0	50	48	0	0	52	1.00
32026--32168	48	3.0	48	94	0	259	27	11	11	49	1.72
32686--32980	41	6.7	44	83	8	258	14	27	21	36	1.92
32686--32861	95	1.9	95	91	2	291	17	27	20	35	1.94
32982--33201	50	4.4	50	87	2	293	13	27	19	39	1.89
36579--36615	19	2.0	18	89	5	56	40	8	21	29	1.82
41909--41937	15	2.0	15	93	6	51	34	3	13	48	1.60
44836--44930	48	2.0	48	97	0	181	27	12	12	47	1.78
45080--45111	15	2.1	15	94	0	55	50	3	18	28	1.62
48403--48613	48	4.6	48	77	9	208	17	27	18	36	1.93
48545--48796	41	6.2	40	87	4	317	13	26	20	39	1.90
48545--48796	81	3.1	81	86	3	339	13	26	20	39	1.90
48561--48796	122	1.9	121	85	4	323	13	25	21	39	1.90
48875--49106	50	4.6	50	90	0	338	17	29	17	35	1.93
49030--49182	77	2.0	76	87	1	216	14	32	18	34	1.91
49108--49285	49	3.6	49	80	4	180	14	28	17	39	1.89
48991--49226	126	1.9	127	88	2	359	15	27	19	37	1.92
49108--49277	50	3.4	49	81	4	171	14	28	18	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48930--49278	176	2.0	177	86	2	488	15	29	17	36	1.91
52592--52626	2	18.0	2	94	5	63	48	0	0	51	1.00
52592--52626	15	2.4	15	95	4	63	48	0	0	51	1.00
52592--52626	17	2.1	17	94	5	63	48	0	0	51	1.00
53866--54027	58	2.9	56	88	4	245	17	15	28	38	1.91
53866--54017	26	5.4	25	73	23	126	17	15	28	38	1.90
58812--58860	16	3.0	16	79	11	55	26	0	24	48	1.51
58812--58845	8	4.4	8	88	3	52	23	0	26	50	1.50
66452--66613	58	2.8	57	88	4	238	18	14	27	40	1.89

Tables:   1

The End!