Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015204.1 Corchorus capsularis cultivar CVL-1 contig15225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74926

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4642--4675
11
3.2
10
84
15
50
29
2
17
50
1.61
16524--16664
26
4.8
32
68
28
107
21
14
26
37
1.92
16444--16719
58
4.9
56
90
4
403
19
14
27
39
1.90
16787--16882
48
2.0
48
100
0
192
22
4
39
33
1.74
18099--18200
51
2.0
51
92
0
168
21
9
25
43
1.83
23182--23207
2
13.0
2
100
0
52
50
0
0
50
1.00
23487--23567
29
2.8
29
86
5
101
27
22
9
40
1.85
24228--24287
31
1.9
31
83
6
77
48
13
16
21
1.80
34228--34257
2
15.0
2
100
0
60
50
0
0
50
1.00
33872--34660
414
1.9
406
86
6
1119
31
9
13
45
1.75
34876--34984
57
1.9
56
88
5
166
32
10
11
46
1.72
36428--36452
2
12.5
2
100
0
50
0
0
48
52
1.00
40427--40460
17
2.1
17
88
5
52
73
5
14
5
1.21
45722--45771
25
2.0
25
100
0
100
16
20
28
36
1.93
46822--46855
4
8.8
4
90
6
52
82
0
17
0
0.67
46819--46856
12
3.2
12
88
3
60
84
0
15
0
0.63
61086--61125
15
2.6
15
88
4
53
7
17
40
35
1.78
70435--70749
41
7.7
41
87
1
456
38
19
13
28
1.89
70435--70729
82
3.6
82
95
0
511
39
18
13
28
1.88

Tables:   1

The End!