genome.fa.s15242.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015242.1 Corchorus capsularis cultivar CVL-1 contig15263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  140173

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5520--5666	47	3.1	47	90	1	231	34	17	27	21	1.95
5673--5755	23	3.5	23	79	9	80	43	1	22	32	1.61
5663--5755	15	6.5	15	73	22	92	44	1	22	32	1.60
5784--5916	38	3.5	38	88	0	194	30	18	20	30	1.96
5918--6009	38	2.5	37	94	3	159	31	10	21	35	1.88
5790--6418	136	4.7	136	80	10	814	30	15	19	34	1.93
5818--6406	98	6.0	100	84	5	582	30	15	19	34	1.93
5954--6134	60	3.0	60	95	1	308	32	12	20	34	1.90
6052--6096	22	2.0	24	82	8	58	37	11	20	31	1.87
5866--6232	158	2.3	158	94	0	635	31	13	19	34	1.91
6076--6172	38	2.6	38	90	3	144	30	13	19	36	1.90
6174--6308	38	3.6	38	88	2	193	29	15	18	36	1.92
6286--6330	22	2.0	24	86	8	67	37	11	17	33	1.85
6310--6416	38	2.9	37	94	2	180	27	16	19	36	1.93
6310--6446	38	3.6	38	89	2	179	27	16	21	35	1.95
8228--8275	14	3.5	13	83	8	60	35	12	8	43	1.73
12250--12470	62	3.6	61	79	4	221	33	16	23	26	1.96
12317--12497	63	2.9	64	78	3	179	34	17	22	25	1.95
12557--12685	49	2.6	48	85	2	168	33	14	31	20	1.93
17010--17059	26	1.9	26	88	8	75	22	12	20	46	1.83
17323--17356	17	1.9	17	88	5	50	76	2	5	14	1.09
23824--23874	11	4.6	11	78	7	50	37	0	1	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24624--24673	16	3.2	16	77	11	50	46	16	2	36	1.58
26501--26527	2	13.5	2	100	0	54	48	0	0	51	1.00
29337--29366	6	5.0	6	100	0	60	50	16	0	33	1.46
30996--31026	16	1.9	16	93	0	53	12	6	0	80	0.89
32668--32711	11	4.0	11	78	0	52	20	25	34	20	1.97
32649--32711	33	1.9	33	90	0	99	23	25	31	19	1.98
33114--33138	2	12.5	2	100	0	50	48	0	0	52	1.00
33426--33486	16	3.8	16	82	0	77	40	1	13	44	1.53
33436--33482	10	4.5	10	84	10	67	38	2	12	46	1.54
33427--33483	22	2.6	21	84	13	71	40	1	12	45	1.52
35373--35439	31	2.2	29	89	5	98	20	16	19	43	1.88
35384--35446	29	2.1	31	85	5	85	22	15	20	41	1.90
35680--35714	2	17.5	2	100	0	70	48	0	0	51	1.00
37842--37884	8	5.2	8	78	15	52	4	23	0	72	1.04
37844--37886	14	3.3	14	78	18	56	4	25	0	69	1.07
40857--40896	7	6.1	7	77	16	50	0	17	0	82	0.67
40858--40892	18	1.9	18	100	0	70	0	20	0	80	0.72
41887--41925	9	4.3	9	83	0	51	53	0	2	43	1.14
41948--41981	17	2.0	17	94	0	59	32	35	8	23	1.86
41991--42053	29	2.2	29	94	0	108	17	26	33	22	1.96
44141--44199	15	3.9	15	86	0	73	42	25	22	10	1.84
56720--56758	9	4.3	9	83	0	51	53	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60741--60769	6	5.0	6	91	8	51	31	0	0	68	0.89
63042--63086	21	2.1	21	84	8	56	51	17	22	8	1.73
69470--69642	28	6.3	27	80	9	163	45	20	13	20	1.85
69470--69638	54	3.1	53	76	9	169	44	21	14	20	1.86
82117--82157	19	2.2	19	86	4	57	7	17	0	75	1.02
85849--85900	27	1.9	27	88	0	77	48	11	21	19	1.80
87999--88077	29	2.9	27	79	7	86	16	16	26	40	1.89
91720--91745	7	3.7	7	100	0	52	46	11	15	26	1.80
91738--91866	27	4.9	26	79	11	147	56	6	20	16	1.62
91733--91866	53	2.5	53	91	0	214	55	7	20	16	1.64
91733--91864	26	5.0	25	80	9	138	56	7	19	16	1.64
91944--92105	7	23.0	7	65	19	61	53	1	25	19	1.55
91933--91991	29	2.1	27	87	6	82	55	5	22	16	1.60
91940--91998	27	2.1	28	90	6	93	54	3	22	20	1.59
91960--92111	35	4.6	34	80	11	183	53	1	25	19	1.55
92080--92196	40	2.6	45	75	20	129	57	2	22	17	1.52
92093--92397	40	7.3	40	73	17	160	55	3	20	20	1.57
92219--92367	7	20.7	7	64	11	52	57	2	19	20	1.53
92142--92375	22	11.0	22	75	11	213	55	3	19	21	1.57
92386--92430	23	2.0	23	95	0	81	55	4	22	17	1.60
92349--92420	30	2.4	29	80	15	101	58	4	20	16	1.55
94989--95022	12	2.7	13	90	4	52	20	11	8	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95019--95051	6	5.5	6	100	0	66	30	0	15	54	1.41
96370--96512	68	2.1	68	100	0	286	37	21	16	25	1.93
102151--102184	12	2.7	13	90	4	52	20	11	8	58	1.59
102843--102901	30	2.0	30	96	0	109	22	23	23	30	1.99
111381--111422	21	2.0	20	86	4	57	28	21	11	38	1.89
111532--111589	30	1.9	30	92	0	98	22	25	22	29	1.99
112298--112331	13	2.7	13	90	4	52	20	2	0	76	0.92
112347--112398	23	2.3	23	87	12	74	23	7	0	69	1.14
115613--115652	6	7.2	6	81	13	50	82	15	2	0	0.77
115608--115653	11	4.3	11	88	2	67	78	17	2	2	0.96
115613--115655	22	2.0	22	95	4	79	79	16	4	0	0.90
117916--118004	44	2.0	44	100	0	178	39	4	24	31	1.75
119708--119855	76	1.9	76	91	0	242	41	3	15	39	1.64
125718--125791	27	2.7	27	85	2	94	45	25	9	18	1.80
129543--129573	15	2.1	15	93	0	53	29	22	3	45	1.68
134189--134455	138	1.9	138	94	0	471	35	24	9	30	1.88
135737--135783	24	2.0	24	91	0	76	44	4	21	29	1.71
136482--136511	11	2.7	11	100	0	60	56	10	0	33	1.32
137149--137798	219	3.0	218	87	3	913	34	8	21	36	1.84
139082--139131	2	26.5	2	80	11	61	48	0	2	50	1.12
139239--139269	3	10.3	3	92	0	53	35	3	32	29	1.73
140113--140159	3	15.7	3	100	0	94	34	0	0	65	0.93

Tables:   1

The End!