genome.fa.s15277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015277.1 Corchorus capsularis cultivar CVL-1 contig15298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25400

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1120	81	13.9	81	89	3	1531	46	10	21	21	1.81
1--1120	121	9.2	121	88	5	1529	46	10	21	21	1.81
1--1120	202	5.5	201	88	3	1546	46	10	21	21	1.81
1087--1155	35	2.0	34	82	2	84	47	8	13	30	1.72
1246--1332	31	2.7	31	89	5	120	35	12	25	26	1.92
1282--1412	37	3.7	37	81	9	148	39	10	22	27	1.87
13200--13423	36	6.2	36	78	9	233	28	18	8	44	1.79
13169--13396	73	3.1	72	81	8	300	25	18	8	46	1.77
13412--13500	18	5.1	18	66	12	60	28	22	10	39	1.86
13402--13478	32	2.4	32	95	0	136	28	22	9	40	1.84
13411--13710	37	8.4	37	79	7	268	24	25	8	41	1.83
13466--13710	74	3.4	73	88	3	354	24	26	7	42	1.81
13699--13837	36	3.8	35	86	9	174	26	14	12	46	1.81
13846--13976	41	3.2	41	95	0	235	23	22	9	44	1.82
13829--14018	82	2.4	77	78	11	218	24	20	10	45	1.81
14025--14774	37	19.3	37	78	10	554	25	18	8	47	1.76
14328--14549	46	5.0	46	79	9	255	21	22	7	49	1.74
14284--14466	92	2.1	87	84	9	230	21	20	8	49	1.74
14367--14790	83	5.5	76	80	9	282	25	20	6	47	1.74
16416--16482	25	2.7	26	86	4	93	16	22	13	47	1.81
17650--17722	27	2.7	27	89	0	101	13	12	27	46	1.79
19458--19493	18	2.0	18	88	0	54	86	8	5	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20541--20611	28	2.6	27	80	12	74	15	25	2	56	1.53
20673--20753	21	3.9	21	80	6	85	23	22	4	49	1.69
20783--20828	14	3.4	14	78	3	58	17	19	4	58	1.55
20863--20932	32	2.2	32	87	7	97	22	18	5	52	1.66
20976--21086	43	2.7	40	87	8	168	19	23	3	53	1.61
21168--21231	16	4.1	16	72	8	69	17	23	6	53	1.66
21057--21274	110	2.0	111	82	6	273	16	23	8	52	1.70
24399--24445	23	2.0	23	83	0	58	21	6	6	65	1.38

Tables:   1

The End!