genome.fa.s15290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015290.1 Corchorus capsularis cultivar CVL-1 contig15311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88358

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2053--2101	21	2.2	24	85	10	68	57	12	10	20	1.64
11644--11684	2	21.0	2	95	5	75	0	48	0	51	1.00
11655--11695	18	2.4	17	87	4	55	0	46	0	53	1.00
13904--13938	16	2.2	16	100	0	70	5	5	0	88	0.63
18010--18118	31	3.5	31	84	1	139	32	26	23	17	1.97
18603--18645	20	2.2	20	95	0	77	25	16	16	41	1.88
18399--18997	218	2.9	213	87	6	856	29	10	20	39	1.86
18620--19039	195	2.1	196	88	2	608	29	11	20	39	1.87
18961--19042	21	4.0	21	77	6	78	29	10	18	41	1.84
19086--19154	21	3.3	21	82	8	70	34	15	17	31	1.92
20598--20622	12	2.1	12	100	0	50	40	24	8	28	1.83
28018--28076	20	2.9	20	87	2	82	30	23	18	27	1.98
28181--28810	198	3.1	198	84	5	714	34	16	12	36	1.87
35136--35167	11	2.9	11	90	0	55	37	0	18	43	1.51
35136--35195	22	2.9	22	76	19	65	41	3	18	36	1.67
35146--35183	19	2.1	18	90	5	58	44	2	21	31	1.66
36529--36559	6	5.3	6	96	3	55	35	0	12	51	1.40
38217--38259	21	2.0	21	100	0	86	23	9	48	18	1.76
41104--41142	12	3.2	12	85	0	51	12	33	23	30	1.92
41551--41580	12	2.5	12	94	0	51	33	16	26	23	1.96
43594--43626	14	2.3	15	89	5	50	15	0	21	63	1.30
44453--44501	24	2.0	24	84	7	64	32	6	36	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45549--45685	72	1.9	72	90	3	222	34	20	20	24	1.96
46752--46794	15	2.9	15	85	0	50	39	41	9	9	1.69
46769--46797	15	1.9	15	100	0	58	27	44	13	13	1.82
46770--46804	15	2.3	15	90	0	52	34	45	11	8	1.71
50081--50122	20	2.2	20	86	4	59	14	33	11	40	1.82
51493--51612	59	2.0	59	93	0	204	25	21	13	39	1.90
52516--52552	19	1.9	19	100	0	74	16	32	13	37	1.87
52602--52660	19	2.9	21	75	10	68	32	22	10	35	1.87
52702--53727	514	2.0	513	97	0	1928	29	20	13	36	1.91
53772--53806	16	2.2	16	94	0	61	25	14	11	48	1.77
57329--57364	16	2.2	17	90	5	56	25	8	27	38	1.84
60085--60882	402	2.0	400	91	2	1287	29	18	19	31	1.96
69238--69277	21	2.0	19	85	9	53	30	27	0	42	1.56
69990--70054	24	2.7	24	85	4	78	3	46	0	50	1.17
70891--70919	1	29.0	1	100	0	58	0	0	0	100	0.00
80388--80509	64	1.9	64	96	0	226	45	22	11	21	1.83

Tables:   1

The End!