Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015366.1 Corchorus capsularis cultivar CVL-1 contig15387, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110498

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1334--1491
79
2.0
79
100
0
316
32
18
21
26
1.97
3530--3556
2
13.5
2
100
0
54
48
0
0
51
1.00
3967--3999
15
2.2
15
94
0
57
33
15
0
51
1.43
4138--4378
132
1.8
131
88
4
369
39
9
1
48
1.44
5898--6045
78
1.9
78
85
2
208
35
10
1
52
1.44
8712--8741
2
15.0
2
100
0
60
50
0
0
50
1.00
10210--11270
439
2.4
435
81
6
1255
42
12
13
31
1.81
12330--12361
2
17.0
2
87
12
50
50
0
0
50
1.00
18240--18271
17
1.9
16
93
6
55
75
3
3
18
1.08
18245--18320
26
2.8
27
80
15
77
68
3
3
23
1.23
21921--21947
6
4.5
6
100
0
54
55
14
0
29
1.40
28486--28552
30
2.2
32
82
17
88
52
8
10
28
1.66
28609--28663
26
2.1
26
90
6
85
41
12
7
38
1.71
28989--29015
6
4.5
6
100
0
54
55
14
0
29
1.40
30629--30664
16
2.2
16
90
0
54
52
36
2
8
1.46
33646--33751
32
3.3
31
85
5
140
33
21
22
21
1.97
37151--37199
25
2.0
25
91
0
80
53
14
16
16
1.74
38758--38822
26
2.6
25
85
9
80
46
0
0
53
1.00
38710--38797
2
49.0
2
70
20
52
50
4
1
44
1.30
43693--43722
13
2.4
13
94
5
53
33
6
6
53
1.53
46928--46952
2
12.5
2
100
0
50
52
0
0
48
1.00
47443--47492
22
2.4
21
87
12
68
42
12
6
40
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47533--47643
54
2.1
54
91
0
177
19
18
24
36
1.94
47795--47846
22
2.3
23
90
9
81
34
17
3
44
1.67
47792--47887
22
4.3
22
75
7
68
38
16
6
38
1.74
47860--47966
52
2.1
52
82
7
128
36
13
14
36
1.84
49669--49729
21
2.9
21
79
13
63
59
1
14
24
1.45
54606--54686
29
2.7
30
92
3
137
38
13
7
40
1.73
59861--60025
33
5.0
33
93
0
258
10
32
40
17
1.83
60026--60074
14
3.1
16
72
16
57
48
8
26
16
1.73
68769--68828
29
2.1
29
87
0
84
50
3
3
43
1.35
68925--68967
23
1.9
23
86
13
63
39
0
0
60
0.97
79891--79935
20
2.2
20
96
0
81
33
17
26
22
1.96
82151--82207
25
2.3
25
87
0
78
21
28
29
21
1.98
95778--95809
2
16.0
2
100
0
64
50
0
0
50
1.00
96192--96263
25
3.0
23
84
7
99
36
19
30
13
1.91
97142--97215
23
3.1
23
83
7
94
35
18
29
16
1.93
97144--97216
25
3.0
25
86
4
96
36
17
30
15
1.91
100976--101025
23
2.2
22
82
3
55
30
18
6
46
1.73
102182--102680
48
10.4
49
78
5
405
22
25
17
35
1.95
102202--102679
97
5.0
96
78
6
427
22
24
17
35
1.95
102202--102680
145
3.3
143
79
6
407
22
24
17
35
1.95

Tables:   1

The End!