Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015502.1 Corchorus capsularis cultivar CVL-1 contig15523, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6648

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3506--3532
8
3.4
8
100
0
54
66
11
11
11
1.45
4076--4116
21
2.0
21
85
0
55
39
14
4
41
1.67
4111--4275
43
3.8
43
90
0
249
36
16
7
38
1.77
4231--4430
56
3.8
56
75
16
237
38
18
6
37
1.76
4188--4669
99
4.9
99
91
4
791
37
17
6
38
1.76
4287--4374
43
2.0
43
93
0
149
37
18
7
36
1.80
4386--4473
43
2.0
43
95
0
158
38
19
6
35
1.78
4386--4769
91
4.5
81
79
15
298
37
18
7
36
1.78
4429--4535
56
1.9
56
100
0
214
37
17
5
39
1.74
4499--4556
19
3.2
19
64
14
50
34
18
10
36
1.85
4485--4769
35
8.1
35
73
18
234
37
18
7
36
1.79
4188--4669
190
2.5
192
93
2
806
37
17
6
38
1.76
4520--4627
56
1.9
55
92
1
180
38
19
5
36
1.75
4427--4747
91
3.6
91
83
12
391
37
18
6
38
1.77
4579--4747
43
4.1
43
84
12
246
37
17
7
37
1.77
4632--4768
18
7.3
19
61
19
63
37
18
8
35
1.82
4794--5146
47
7.2
47
75
16
331
25
17
6
50
1.70
4836--4911
38
2.0
38
97
0
143
27
19
7
44
1.78
4874--5146
102
2.7
103
90
1
442
25
16
6
51
1.69
4933--5146
55
4.0
55
83
10
300
24
16
7
51
1.69
5966--6133
50
3.3
50
82
5
214
39
11
5
44
1.63

Tables:   1

The End!