Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015518.1 Corchorus capsularis cultivar CVL-1 contig15539, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68787

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4146--4189
9
5.0
9
81
13
56
54
2
0
43
1.12
5886--5920
6
5.8
6
96
0
61
37
11
0
51
1.38
19199--19248
16
3.1
15
83
11
55
4
20
2
74
1.08
22927--22973
18
2.8
17
93
6
78
14
0
14
70
1.18
23062--23214
75
2.0
75
96
0
279
49
15
3
32
1.62
26591--26654
32
1.9
32
87
9
92
29
3
14
53
1.56
27076--27101
13
2.0
13
100
0
52
46
23
0
30
1.53
32454--32511
27
2.0
29
81
18
68
55
3
5
36
1.39
40183--40209
3
9.0
3
100
0
54
66
0
33
0
0.92
40471--40501
6
5.2
6
96
0
53
0
35
0
64
0.94
41145--41175
13
2.3
14
94
5
55
80
0
3
16
0.83
43946--44007
29
2.1
30
84
3
81
40
4
11
43
1.62
46859--46897
7
5.7
7
96
3
71
25
0
0
74
0.82
48430--48484
15
3.7
15
77
0
56
40
36
20
3
1.70
48536--48616
3
27.0
3
84
0
63
53
34
12
0
1.39
48536--48606
21
3.4
21
86
0
79
52
33
14
0
1.42
48536--48618
9
8.9
9
77
12
78
51
34
13
0
1.41
48615--48663
18
2.7
18
80
0
53
22
53
20
4
1.63
48868--48892
1
25.0
1
100
0
50
0
0
0
100
0.00
57487--57700
32
6.6
32
91
0
284
16
41
28
13
1.87
57755--57881
33
3.9
32
81
5
137
14
34
40
10
1.79
57843--57971
33
3.9
32
75
8
100
13
41
31
13
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63795--63869
40
1.9
38
89
10
116
50
17
8
24
1.72
66226--66272
24
2.0
24
95
0
85
36
14
14
34
1.88
68137--68164
2
14.0
2
100
0
56
50
0
0
50
1.00
68307--68389
15
5.4
15
70
14
62
15
30
26
27
1.96
68304--68405
48
2.1
48
98
0
195
17
29
26
26
1.98

Tables:   1

The End!