genome.fa.s15542.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015542.1 Corchorus capsularis cultivar CVL-1 contig15563, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41582

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9050--9092	3	14.3	3	90	0	68	62	2	0	34	1.08
11667--11729	30	2.1	30	88	5	92	30	19	33	17	1.95
12960--13017	30	1.9	30	96	0	107	15	34	20	29	1.94
17647--18097	35	12.3	35	86	9	534	24	21	8	45	1.79
18103--18377	34	7.7	34	75	14	261	25	13	12	48	1.77
18105--18393	71	4.0	71	94	3	508	25	13	13	48	1.78
18100--18394	145	2.0	145	98	0	563	24	12	13	49	1.77
18353--18553	41	4.7	41	73	9	141	24	17	12	45	1.83
21685--21728	23	1.9	23	95	0	79	25	9	18	47	1.77
21684--21735	23	2.3	23	86	0	77	23	9	19	48	1.78
25614--25680	34	1.9	34	85	11	91	50	7	19	22	1.72
25635--25733	30	3.2	30	76	5	90	49	9	18	23	1.75
25753--25813	20	2.9	22	76	18	58	55	3	18	22	1.56
25776--26038	20	12.9	20	75	13	225	53	4	20	22	1.62
25767--25854	35	2.6	34	85	5	106	54	4	18	22	1.61
25844--25901	13	4.4	13	75	12	55	48	5	20	25	1.70
25831--25901	7	10.6	7	74	8	58	47	5	21	25	1.72
25802--26041	22	11.4	21	79	11	242	54	3	20	21	1.60
26005--26095	7	12.7	7	70	13	51	60	1	17	20	1.42
25994--26088	29	3.3	29	72	7	95	58	2	17	21	1.48
25994--26095	14	7.1	14	72	10	73	59	1	17	20	1.47
26063--26105	21	2.0	21	86	8	61	58	2	20	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25994--26103	29	3.9	28	71	8	78	59	2	17	20	1.50
26051--26205	35	4.6	34	74	16	126	56	3	20	19	1.58
26077--26116	21	1.9	21	85	10	55	62	2	17	17	1.44
29923--29983	30	2.0	30	93	0	104	18	29	21	31	1.96
29923--30002	30	2.7	30	86	0	88	16	25	22	36	1.94
31488--31521	16	2.1	16	100	0	68	38	20	0	41	1.53
35838--35862	9	2.8	9	100	0	50	12	20	44	24	1.85
37874--37929	15	3.9	15	71	17	55	16	21	3	58	1.52
37910--37994	21	4.0	21	77	7	73	20	23	8	48	1.76
37987--38064	35	2.2	35	83	0	93	19	21	10	48	1.78
38043--38110	22	3.1	22	91	6	104	17	17	7	57	1.62
38057--38127	22	3.3	22	84	5	74	16	19	4	59	1.54
38245--38310	31	2.1	31	86	8	89	25	18	6	50	1.70
38342--38549	47	4.4	47	93	1	328	23	19	9	48	1.77
38423--38501	26	3.2	26	64	29	73	24	16	8	50	1.73
39202--39456	50	5.1	51	73	7	218	34	18	5	41	1.72
39201--39456	101	2.5	100	89	1	386	34	17	5	42	1.72
39442--39480	20	2.0	20	89	0	60	35	15	15	33	1.89

Tables:   1

The End!