Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015765.1 Corchorus capsularis cultivar CVL-1 contig15786, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33397

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3740--3788
23
2.2
22
89
10
82
67
8
8
16
1.40
4071--4095
6
4.2
6
100
0
50
16
16
52
16
1.76
6149--6203
24
2.3
24
81
9
67
49
7
16
27
1.72
20495--20647
43
3.7
43
78
12
137
36
5
20
37
1.77
20770--20857
43
2.1
42
86
2
122
39
4
18
37
1.71
20915--21780
37
23.4
36
77
6
777
44
14
16
23
1.85
20915--21767
111
7.7
111
84
4
877
44
15
16
23
1.85
22802--22854
21
2.6
21
81
3
63
26
30
33
9
1.88
25003--25045
21
2.0
21
82
8
52
2
18
2
76
1.00
25309--25367
14
4.4
13
80
16
59
32
11
8
47
1.70
25361--25395
17
1.9
19
88
11
56
25
11
5
57
1.56
28616--28719
44
2.4
44
88
0
163
31
26
15
25
1.96
29004--29702
35
21.0
32
78
14
513
31
19
9
39
1.84
29004--29692
106
6.9
95
77
16
518
31
19
9
39
1.84
29180--29229
26
1.9
26
100
0
100
36
18
8
38
1.80
29036--29692
167
4.0
166
79
12
691
31
19
9
39
1.84
29519--29593
14
4.8
17
70
15
63
34
17
10
37
1.84
29205--29693
31
14.7
34
79
12
436
31
19
10
39
1.84
30170--30548
51
7.5
51
79
9
373
40
14
2
42
1.60
30339--30378
20
2.0
21
90
5
64
40
15
2
42
1.60
30187--30558
150
2.4
155
84
6
465
40
14
2
41
1.60

Tables:   1

The End!