Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015917.1 Corchorus capsularis cultivar CVL-1 contig15938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46451

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2953--2977
12
2.1
12
100
0
50
40
8
8
44
1.63
3663--3721
25
2.5
24
86
5
84
37
22
0
40
1.54
6188--6247
22
2.7
22
87
7
86
43
10
20
26
1.83
6361--6589
22
10.5
22
71
8
126
37
12
15
34
1.85
6361--6589
44
5.2
44
72
5
169
37
12
15
34
1.85
7116--7265
16
9.4
16
73
9
101
32
37
20
10
1.86
7116--7231
48
2.4
48
79
12
123
30
40
22
6
1.80
7148--7231
32
2.6
32
90
0
132
32
39
20
8
1.82
7155--7264
32
3.4
32
84
3
123
34
35
18
11
1.87
7374--7421
21
2.3
21
92
0
78
29
8
6
56
1.53
7984--8053
33
2.1
33
100
0
140
31
31
15
21
1.95
11184--11215
10
3.2
10
95
0
55
31
3
0
65
1.08
12043--12076
16
2.1
16
100
0
68
23
5
5
64
1.38
41858--41921
16
4.1
16
70
11
60
57
6
20
15
1.59
42197--42239
21
2.1
21
86
4
61
51
4
20
23
1.66
42187--42409
35
6.5
33
77
12
118
53
3
21
21
1.59
42252--42401
7
20.7
7
70
7
68
56
1
22
20
1.50
42247--42381
29
4.7
28
73
13
98
56
1
20
21
1.50
42295--42426
36
3.6
36
91
2
210
56
3
22
17
1.54
42492--42557
29
2.2
30
86
2
89
53
6
19
21
1.67
45274--45312
14
2.8
13
84
7
51
48
7
10
33
1.66
45260--45313
28
1.9
28
85
7
74
46
7
11
35
1.67

Tables:   1

The End!