genome.fa.s16010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016010.1 Corchorus capsularis cultivar CVL-1 contig16031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70376

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80--130	25	2.1	24	92	3	84	43	17	0	39	1.49
1063--1115	5	11.0	5	78	17	51	39	0	3	56	1.17
8134--8179	19	2.4	19	92	0	74	34	10	2	52	1.49
12603--12640	20	2.1	18	85	14	51	23	2	10	63	1.39
17985--18174	93	2.0	93	95	0	344	23	28	12	36	1.90
18967--19053	33	2.5	35	94	5	151	50	14	13	20	1.77
18967--19064	33	2.9	32	82	10	115	53	15	12	19	1.73
19238--19277	20	2.0	21	85	14	57	52	12	0	35	1.39
19246--19289	17	2.6	18	85	7	56	54	6	0	38	1.27
19502--19532	2	15.5	2	100	0	62	48	0	0	51	1.00
19771--19799	2	14.5	2	100	0	58	51	0	0	48	1.00
20116--20140	2	12.5	2	100	0	50	0	48	0	52	1.00
24153--24183	2	15.5	2	100	0	62	48	0	0	51	1.00
26488--26672	63	3.0	62	89	6	272	22	9	24	43	1.83
31058--31100	6	7.2	6	100	0	86	65	34	0	0	0.93
51530--51592	31	2.0	31	90	0	99	39	6	19	34	1.77
52717--52788	31	2.2	32	80	9	83	34	6	15	43	1.73
52731--52790	31	1.9	31	93	0	102	35	8	15	41	1.77
52819--52889	37	1.9	37	91	0	115	39	8	15	36	1.78
58584--58613	15	2.1	14	93	6	51	90	0	10	0	0.47
58786--58812	13	2.1	13	100	0	54	22	22	29	25	1.99
66033--66077	23	2.0	23	86	0	63	17	46	13	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66035--66084	23	2.2	23	81	0	55	18	50	14	18	1.79
68540--68629	33	2.8	33	79	1	92	15	36	32	15	1.89
68572--68646	33	2.3	33	83	0	87	16	30	33	20	1.94
70031--70084	23	2.3	23	90	0	81	38	16	5	38	1.72
70117--70190	22	3.4	22	78	0	94	27	14	9	48	1.75
70115--70216	44	2.3	43	81	9	127	31	15	8	44	1.77

Tables:   1

The End!