Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016165.1 Corchorus capsularis cultivar CVL-1 contig16186, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28694

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
835--866
12
2.7
12
90
0
55
9
25
43
21
1.82
820--1048
116
2.0
116
92
1
388
18
31
27
21
1.97
7078--7108
9
3.3
9
95
4
53
12
0
0
87
0.55
8135--8214
33
2.5
32
82
6
92
11
28
38
21
1.88
10655--10686
11
2.8
12
81
18
50
40
18
0
40
1.51
15617--15913
22
13.5
22
90
0
432
25
28
23
22
1.99
20734--20878
36
4.0
36
80
7
168
28
23
8
40
1.83
20887--21152
37
7.2
37
91
1
372
21
27
7
42
1.81
21308--22361
344
3.1
342
94
1
1862
24
20
10
44
1.82
21230--22349
76
14.6
76
87
6
1002
24
20
10
44
1.82
21230--22349
268
4.2
264
88
5
1505
24
20
10
44
1.82
22373--23473
37
28.4
37
82
11
1166
23
18
11
46
1.81
22769--23473
83
8.8
83
82
13
878
23
17
10
47
1.78
22393--23473
157
6.9
157
88
5
1491
23
18
11
46
1.81
22614--23456
120
7.0
118
82
12
844
23
17
10
47
1.79
24784--24809
13
2.0
13
100
0
52
15
7
46
30
1.74
27898--27994
33
2.9
31
84
6
104
10
29
38
21
1.87

Tables:   1

The End!