Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016213.1 Corchorus capsularis cultivar CVL-1 contig16234, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26867

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2078--2198
33
3.7
33
90
0
188
44
19
9
26
1.80
2089--2233
66
2.2
66
81
4
168
42
20
9
26
1.83
2226--2330
33
3.2
33
79
2
131
46
20
8
24
1.78
14131--14233
30
3.7
29
71
24
94
32
23
12
32
1.92
16448--16495
20
2.4
19
80
13
51
64
6
8
20
1.43
17226--17264
11
3.4
12
86
10
55
66
5
20
7
1.36
19984--20073
42
2.1
42
82
8
103
16
21
44
17
1.87
20928--20975
24
1.9
25
83
8
62
43
18
2
35
1.62
20915--21079
43
3.8
43
86
1
206
36
18
6
38
1.77
20992--21240
99
2.5
99
90
1
392
36
18
6
38
1.77
21091--21572
43
11.0
43
68
27
263
36
18
6
37
1.77
21134--21409
56
4.9
56
74
12
278
36
19
6
37
1.77
21190--21353
35
4.5
35
78
11
184
36
20
7
35
1.80
20992--21444
99
4.9
95
77
14
368
36
18
6
38
1.77
21091--21600
169
3.0
169
87
3
699
36
18
6
37
1.78
21295--21529
126
1.9
123
93
3
400
37
18
5
37
1.74
21359--21600
35
7.1
35
73
14
193
37
18
6
38
1.77
21625--21836
47
4.5
48
77
15
217
28
17
7
47
1.74
21667--21742
38
2.0
38
97
0
143
30
18
6
44
1.75
21612--21781
93
1.8
91
88
2
259
28
18
6
46
1.73
22678--22896
50
4.3
51
82
5
241
36
16
6
39
1.76
22678--22896
101
2.2
102
82
6
259
36
16
6
39
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24199--24268
35
2.0
35
91
5
115
14
8
28
48
1.73
25371--25699
92
3.6
92
90
2
470
33
24
16
25
1.96
25804--25866
27
2.3
27
83
2
72
22
14
26
36
1.92
25949--26003
24
2.2
24
83
6
65
25
16
9
49
1.75

Tables:   1

The End!