Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016360.1 Corchorus capsularis cultivar CVL-1 contig16381, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38644

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506--619
55
2.1
55
96
0
210
50
1
3
43
1.29
845--883
16
2.4
16
91
0
60
5
10
41
43
1.61
845--917
16
4.6
16
77
3
58
9
9
38
42
1.70
10621--10670
24
2.1
24
96
3
93
50
22
8
20
1.74
17671--17704
15
2.3
15
100
0
68
29
5
38
26
1.80
22105--22287
88
2.1
88
98
0
357
38
19
18
23
1.93
22448--22490
19
2.3
19
87
0
68
34
20
0
44
1.52
26536--26666
38
3.7
37
72
19
125
32
17
18
32
1.94
26574--26635
29
2.1
29
82
5
72
35
14
19
30
1.92
26536--26703
67
2.5
67
88
2
228
32
17
16
33
1.92
26539--26699
38
4.7
34
70
19
102
31
18
16
34
1.92
35277--36026
35
21.7
34
82
9
731
38
10
19
32
1.85
35478--36026
106
5.2
105
86
6
643
36
10
20
32
1.86
35273--36026
141
5.4
140
83
8
736
38
9
19
32
1.85
35700--35756
16
3.4
16
68
13
51
33
8
26
31
1.87

Tables:   1

The End!