Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016430.1 Corchorus capsularis cultivar CVL-1 contig16451, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35392

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56--195
22
6.3
22
74
11
106
38
18
9
33
1.83
367--404
20
2.0
20
85
15
53
63
5
5
26
1.37
714--782
32
2.2
33
79
12
81
49
4
14
31
1.63
883--907
10
2.5
10
100
0
50
60
0
8
32
1.26
5468--5504
2
19.0
2
94
5
67
51
0
48
0
1.00
6778--6946
31
5.6
30
69
10
103
33
17
20
28
1.95
6781--6949
60
2.8
60
89
0
241
33
17
20
28
1.95
6975--7047
31
2.4
31
90
0
110
24
17
15
42
1.88
8318--8357
15
2.6
15
88
4
53
10
12
35
42
1.76
8316--8435
16
7.6
16
76
12
95
10
20
33
35
1.86
9241--9270
12
2.4
13
88
11
53
36
0
6
56
1.26
9313--9431
7
14.9
8
67
24
65
10
22
37
29
1.87
9306--9431
16
7.9
14
76
18
99
9
22
38
30
1.86
9308--9431
32
3.9
32
86
2
169
9
21
38
29
1.86
9295--9431
48
2.9
47
76
16
138
10
21
36
31
1.87
23067--23091
2
12.5
2
100
0
50
52
0
0
48
1.00
23640--24080
166
2.7
164
86
4
602
29
14
15
39
1.88
27359--27469
39
2.8
40
83
2
145
43
28
12
15
1.83
29177--29488
163
1.9
163
96
0
579
37
16
11
34
1.85
31016--31394
188
2.0
188
99
0
749
35
19
6
38
1.77

Tables:   1

The End!