Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016496.1 Corchorus capsularis cultivar CVL-1 contig16517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18492

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1494--1540
22
2.3
20
85
10
60
40
23
17
19
1.91
2868--2992
2
68.5
2
70
17
67
48
0
0
51
1.00
2870--2992
31
3.9
31
73
9
115
48
0
0
51
1.00
3263--3323
32
1.9
32
86
0
86
26
19
9
44
1.82
4069--4143
22
3.4
21
74
15
71
34
9
18
37
1.83
4192--4384
22
8.7
23
73
13
122
40
10
13
35
1.79
4490--4743
22
11.6
21
71
15
133
41
8
13
36
1.75
4534--4743
66
3.2
66
76
7
158
42
8
13
35
1.75
4490--4741
44
5.7
44
75
10
185
41
8
13
36
1.75
4579--4741
90
1.8
89
81
6
204
42
7
14
34
1.74
4708--4754
22
2.1
22
92
0
76
34
10
14
40
1.81
4708--4763
22
2.5
23
83
13
73
35
12
12
39
1.81
4844--4907
22
2.9
22
76
4
58
32
14
18
34
1.91
7020--7072
15
3.5
15
81
0
70
13
35
15
35
1.86
7018--7060
21
2.0
21
86
0
59
16
34
13
34
1.88
9480--9724
126
1.9
126
86
0
346
23
42
9
24
1.84
9688--9729
21
2.0
21
85
0
57
21
47
11
19
1.81
9711--9736
6
4.3
6
100
0
52
19
50
15
15
1.79
9586--9843
138
1.9
135
86
5
367
21
44
9
24
1.81
18353--18384
16
2.0
17
88
11
50
46
6
12
34
1.67
18420--18492
2
36.5
2
100
0
146
50
0
49
0
1.00

Tables:   1

The End!