Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000389.1 Corchorus capsularis cultivar CVL-1 contig00389, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1589

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--1131
35
33.0
35
84
8
1447
40
10
16
33
1.82
79--240
31
5.1
29
74
16
112
41
10
15
32
1.81
14--1258
35
36.9
33
82
10
1162
40
9
16
33
1.82
4--1258
66
18.5
68
83
10
1303
40
9
16
33
1.82
4--1258
101
12.4
101
80
12
1284
40
9
16
33
1.82
311--381
31
2.5
27
79
16
88
40
11
14
33
1.81
1098--1147
23
2.2
23
85
0
64
38
10
22
30
1.86
1105--1155
23
2.2
23
92
0
93
39
7
19
33
1.81
1001--1256
125
2.0
125
98
0
494
39
7
19
32
1.81
1128--1258
36
3.9
34
80
12
153
39
7
20
32
1.81
1243--1269
14
1.9
14
100
0
54
40
0
29
29
1.57

Tables:   1

The End!