Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000398.1 Corchorus capsularis cultivar CVL-1 contig00398, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8017

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
933--1015
25
3.2
25
81
13
96
20
21
3
54
1.60
945--1052
28
3.9
27
81
13
130
18
21
5
54
1.63
957--1045
31
3.0
31
83
6
114
17
19
5
57
1.59
1047--1092
21
2.2
21
88
7
67
23
21
4
50
1.67
1074--1556
7
67.3
7
66
14
101
21
22
2
54
1.56
1074--1683
14
42.1
14
67
12
144
20
22
2
54
1.58
1172--1306
37
3.8
35
87
8
184
21
20
2
55
1.56
1368--1552
36
5.1
36
82
8
205
20
24
1
53
1.54
1512--1562
22
2.3
22
82
0
66
17
23
0
58
1.38
1593--1688
7
13.4
7
68
7
59
16
26
4
53
1.61
1589--1688
35
2.8
35
86
6
139
16
25
4
55
1.58
1692--1766
34
2.2
34
83
4
89
25
22
1
50
1.57
1824--1914
32
2.8
32
80
6
87
21
23
3
51
1.62
1879--2058
80
2.2
80
89
1
263
21
21
8
48
1.76
1899--2043
40
3.6
39
74
12
132
23
20
8
48
1.76
6111--6136
2
13.0
2
100
0
52
50
0
0
50
1.00
6725--6858
31
4.4
31
84
0
171
34
31
17
16
1.93

Tables:   1

The End!