genome.fa.s4977.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01004977.1 Corchorus capsularis cultivar CVL-1 contig04995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19619

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1248--1383	51	2.6	54	91	4	215	37	7	15	39	1.75
1338--2089	35	20.3	35	67	22	179	38	7	17	36	1.78
1409--1503	21	4.9	21	68	19	71	41	3	17	37	1.66
1374--1683	56	6.0	55	82	12	288	39	6	18	35	1.77
1288--1813	86	5.6	90	75	16	334	38	7	17	36	1.78
1492--1623	43	3.0	43	92	2	228	37	8	19	34	1.82
1428--1766	143	2.4	143	92	2	590	38	7	18	35	1.78
1643--1846	43	4.7	43	94	2	365	39	8	18	34	1.80
1826--1864	18	2.2	18	100	0	78	35	5	20	38	1.75
1783--1904	61	2.0	61	98	0	235	36	6	18	37	1.77
1740--1947	104	2.0	104	96	0	380	37	7	18	36	1.79
1844--1960	43	2.7	43	90	5	191	39	6	17	36	1.76
1944--1983	21	1.9	21	89	0	62	45	5	17	32	1.70
1989--2050	19	3.4	19	65	13	58	37	9	16	37	1.81
1693--2064	147	2.5	142	81	11	401	39	7	17	35	1.78
2658--2858	59	3.4	59	95	0	357	44	6	17	31	1.75
7576--7639	32	2.0	32	87	0	92	42	31	12	14	1.82
10794--10835	12	3.5	12	93	0	75	26	26	16	30	1.97
10786--10837	24	2.4	21	82	17	70	25	30	15	28	1.96
11323--11654	166	2.0	166	96	0	619	49	3	12	34	1.58
11819--11850	10	3.2	10	100	0	64	28	0	0	71	0.86
11818--11869	20	2.6	19	82	14	61	26	3	0	69	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12092--12219	22	5.7	22	74	14	84	35	12	16	35	1.86
12373--12613	22	10.9	22	67	19	76	41	8	13	36	1.76
12511--12611	44	2.3	45	80	8	111	42	8	9	38	1.70
12626--12677	22	2.4	22	90	3	79	42	5	9	42	1.61
12785--12849	19	3.4	19	89	2	94	44	13	20	21	1.86
12835--12979	22	6.6	21	71	15	89	40	10	13	35	1.79
12834--12979	66	2.2	67	80	9	167	40	10	13	35	1.79
12840--12964	44	2.9	43	80	11	123	40	11	11	37	1.77
12964--12994	15	2.1	15	93	0	53	48	9	16	25	1.76
13028--13131	23	4.6	23	80	3	104	37	7	14	40	1.75
13074--13142	22	3.1	22	85	0	84	36	10	14	39	1.80
13180--13235	22	2.5	22	82	2	67	32	12	17	37	1.88

Tables:   1

The End!