Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005085.1 Corchorus capsularis cultivar CVL-1 contig05103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12415

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1246--1460
89
2.4
89
94
0
376
39
5
18
37
1.73
3076--3379
167
1.8
167
81
1
376
37
21
15
25
1.93
4298--4361
33
2.1
33
83
16
84
57
1
28
12
1.44
7339--7377
20
1.9
21
89
5
62
23
20
23
33
1.97
10026--10059
14
2.5
13
86
9
50
76
0
23
0
0.79
10841--11174
56
6.0
56
94
0
560
38
5
16
39
1.73
10876--11147
21
14.3
21
67
20
78
39
5
15
39
1.71
11009--11273
91
2.9
91
86
3
293
39
5
15
39
1.71
11128--11189
17
3.6
17
72
12
63
33
9
16
40
1.81
10953--11377
203
2.1
203
92
0
697
38
6
16
38
1.74
11156--11437
56
5.0
56
91
0
429
39
7
15
36
1.77
10876--11497
112
5.6
110
79
9
432
38
6
16
38
1.75
10876--11497
168
3.7
167
79
9
501
38
6
16
38
1.75
11009--11319
147
2.1
147
92
0
514
38
6
16
38
1.74
11247--11286
21
1.9
21
100
0
80
42
0
15
42
1.46
10897--11424
259
2.0
259
93
0
896
38
7
16
38
1.75
11247--11294
21
2.3
21
92
0
78
43
4
12
39
1.62
11303--11350
21
2.3
21
88
0
69
41
4
14
39
1.65
10829--11380
35
15.0
35
67
16
129
38
6
16
38
1.75
11359--11525
73
2.3
74
86
4
232
40
7
17
34
1.78
11404--11549
17
8.2
17
67
22
59
37
7
19
35
1.80
11434--11473
21
1.9
21
89
0
62
32
2
22
42
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11434--11479
21
2.2
21
84
0
56
34
4
19
41
1.71
11395--11531
73
1.9
73
93
0
238
38
8
17
35
1.81
11767--11793
13
2.1
13
100
0
54
62
7
7
22
1.46

Tables:   1

The End!