Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005278.1 Corchorus capsularis cultivar CVL-1 contig05296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19330

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
460--522
30
2.1
30
85
5
83
39
14
14
31
1.86
1675--1722
22
2.2
22
96
0
87
22
14
8
54
1.67
3089--3123
13
2.7
13
100
0
70
68
17
8
5
1.35
6837--7419
35
16.9
34
82
8
551
32
18
10
38
1.85
6919--6974
17
3.2
16
74
18
51
33
14
12
39
1.83
6837--7413
70
8.3
69
82
8
619
32
18
10
38
1.85
6911--7417
242
2.1
236
86
6
698
32
18
10
38
1.85
8808--8841
2
17.0
2
100
0
68
50
0
0
50
1.00
10389--10432
22
2.0
22
91
8
72
45
11
15
27
1.81
10648--10712
31
2.1
31
100
0
130
12
24
15
47
1.79
11129--11188
20
3.2
19
79
11
61
53
1
1
43
1.20
18152--18217
31
2.1
31
91
0
105
50
4
16
28
1.65

Tables:   1

The End!