Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01005978.1 Corchorus capsularis cultivar CVL-1 contig05996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43501

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5480--5599
41
2.9
41
82
6
132
32
15
15
35
1.90
5483--5625
43
3.4
42
83
3
162
30
16
15
38
1.89
5608--5872
47
5.7
46
89
2
377
38
12
9
39
1.76
5608--5872
93
2.8
93
89
2
379
38
12
9
39
1.76
6627--6672
23
2.0
23
95
0
83
50
10
8
30
1.68
9715--10310
30
19.7
30
87
0
769
32
16
17
33
1.93
10372--10716
118
2.9
118
96
0
636
24
17
20
37
1.94
12588--12651
33
1.9
33
83
0
83
31
21
20
26
1.98
14310--14614
126
2.5
123
78
9
313
25
19
17
37
1.93
15090--15136
25
1.9
25
91
4
78
44
12
10
31
1.77
18846--18873
3
9.3
3
100
0
56
32
0
0
67
0.91
19563--19598
17
2.1
17
100
0
72
19
22
16
41
1.90
27524--27567
20
2.2
20
100
0
88
0
45
4
50
1.22
30086--30116
10
3.2
10
95
4
55
45
19
6
29
1.75
29944--30251
168
1.8
168
99
0
607
31
21
7
39
1.81
31560--31740
92
2.0
93
88
5
271
24
8
22
44
1.81
33212--33273
31
2.0
32
93
3
108
43
0
32
24
1.54

Tables:   1

The End!