Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006050.1 Corchorus capsularis cultivar CVL-1 contig06068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3860

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1535--1563
12
2.3
13
94
5
51
6
0
6
86
0.72
2149--2219
8
8.9
8
76
6
72
46
2
19
30
1.64
2149--2222
16
4.6
16
75
12
80
47
2
20
29
1.64
2150--2220
24
3.0
24
82
0
97
45
2
21
30
1.66
2301--2441
8
18.8
8
65
21
56
46
2
21
28
1.65
2246--2342
22
4.4
22
78
3
88
43
4
19
32
1.70
2314--2533
14
15.5
14
67
19
70
47
5
20
27
1.71
2287--2366
36
2.2
35
82
10
99
46
3
21
28
1.68
2290--2433
58
2.4
60
82
7
179
46
3
21
28
1.67
2338--2507
22
7.6
22
74
13
98
47
5
20
27
1.71
2412--2487
8
10.0
8
72
16
63
46
9
17
27
1.78
2412--2487
30
2.5
30
79
10
84
46
9
17
27
1.78
2412--2534
8
16.9
8
70
18
54
47
7
19
26
1.75
2509--2562
22
2.5
22
81
0
72
40
3
24
31
1.72
2541--2682
58
2.4
59
83
4
173
42
11
23
22
1.87
2659--2750
8
11.9
8
71
15
68
50
2
19
28
1.60
2672--2750
24
3.4
24
81
10
92
53
1
17
27
1.52
2673--2785
45
2.5
45
82
2
129
51
2
19
26
1.60
2697--2832
37
3.5
37
71
14
119
49
2
22
25
1.61
2648--2740
16
5.4
16
69
16
53
47
2
22
27
1.63
2709--2796
45
2.0
45
81
0
104
48
3
23
23
1.66

Tables:   1

The End!