Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006201.1 Corchorus capsularis cultivar CVL-1 contig06220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94243

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
803--851
26
1.9
25
88
12
73
44
10
12
32
1.75
2847--2876
15
2.1
14
93
6
51
33
0
0
66
0.92
2852--2890
20
2.0
20
89
0
60
28
0
0
71
0.86
5680--5763
27
3.1
27
85
0
114
28
29
26
15
1.96
6457--6737
53
5.4
53
71
16
255
23
29
29
16
1.97
6510--6762
50
4.9
50
68
18
180
23
29
30
17
1.97
6457--6763
103
3.0
103
94
0
542
23
28
29
17
1.97
19691--19737
20
2.4
20
89
3
69
51
6
21
21
1.70
36498--36535
14
2.7
14
91
0
58
55
2
36
5
1.37
45023--45071
24
2.0
24
100
0
98
36
8
4
51
1.51
45120--45147
11
2.5
11
100
0
56
50
14
0
35
1.43
46926--46974
22
2.2
22
86
10
73
53
20
2
24
1.56
47551--47883
135
2.5
131
85
3
411
36
17
18
27
1.93
48314--48563
109
2.3
108
85
4
344
38
10
10
41
1.73
53681--53778
50
2.0
48
92
5
162
37
7
14
40
1.73
54194--54227
14
2.4
14
95
0
59
38
14
8
38
1.78
54458--54495
1
38.0
1
100
0
76
0
0
0
100
0.00
54636--54683
3
16.0
3
100
0
96
66
0
0
33
0.92
58372--59036
337
2.0
331
88
5
982
41
14
12
31
1.83
60743--60786
4
11.5
4
90
9
74
50
0
22
27
1.50
60727--60786
14
4.1
14
91
6
84
48
0
20
31
1.50
67481--67520
16
2.6
16
96
4
73
50
12
7
30
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73498--73579
41
2.0
40
92
2
137
40
18
13
28
1.88
81264--81307
19
2.2
20
84
11
56
59
6
4
29
1.44
81267--81443
96
1.8
96
95
0
318
50
9
7
32
1.62
81630--81684
23
2.2
24
78
18
60
54
0
10
34
1.36
83139--83268
66
2.0
66
90
0
206
39
10
14
35
1.81
88873--88905
12
2.8
12
86
4
50
48
9
12
30
1.71
92571--92614
22
2.0
22
86
8
63
40
11
4
43
1.61
92629--93233
22
27.9
22
65
13
134
37
15
8
38
1.78
92914--93002
23
3.8
23
75
7
81
41
14
6
37
1.72
92914--92999
25
3.7
24
76
7
88
40
15
6
37
1.74
93273--93378
22
4.8
22
71
9
81
33
16
10
40
1.82
93248--93396
44
3.4
44
75
1
138
33
14
10
42
1.79
93275--93397
22
5.6
22
67
16
69
34
15
9
40
1.80
93410--93509
21
4.5
23
74
15
86
34
13
9
44
1.75
93814--93868
22
2.5
22
81
3
65
41
16
10
30
1.83
93899--93954
22
2.5
22
82
2
67
41
12
10
35
1.78
93936--94024
25
3.8
23
72
7
72
40
15
6
37
1.74
94050--94189
22
6.5
22
72
8
117
33
17
7
41
1.78

Tables:   1

The End!